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* **PTHR ID & PTN node:**
PTN000385050 (PTHR15004)
* **Sequences with problematic annotation (ID + gene/protein name):**
Fly GatC (FBgn0064115)
Fly GatA (FBgn0260779)
Fly GatB (FBgn0039153)
…
sjm41 updated
2 months ago
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The Protein Complex Working group has decided that annotations to GO:0032991 protein-containing complex & children should NOT be allowed with the colocalizes_with qualifier, see #1500.
**There ar…
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Adjust score to reflect the adjacency of two proteins connected by an edge (in some cases we connect two proteins that are actually linked via one or more intermediary proteins). See David's annotatio…
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I'm seeking the source data for the Gene Ontology (Biological Process) in hetio for 2015. According to this [manuscript](https://git.dhimmel.com/rephetio-manuscript/), hetio contains 559,504 annotatio…
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Reviewing the annotation intersection violations alerted us to:
https://amigo.geneontology.org/amigo/reference/PMID:12485443
This paper describes plasma membrane lipid profiling, and as such isn't…
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* **PTHR ID & PTN node:**
PTN000123147
* **Sequences with problematic annotation (ID + gene/protein name):**
This GO term protein O-linked fucosylation (GO:0036066)is added as part of the node an…
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**UniProt UniRule (ID and label):**
[UR000160875](https://www.uniprot.org/unirule/UR000160875)
**Sequences with problematic annotation (ID + gene/protein name):**
pombe https://www.pombase.or…
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As part of the doc drafted at https://docs.google.com/document/d/1j1zO-JHMaXi4ESrjTm_X1amLKdm3vO4szUaeB5LvxvA/edit#heading=h.25jngq5vebjo and the draft at https://github.com/geneontology/geneontology.…
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1:
All annotations that match rapsearch2__uniref100__trusted_full_partial are being annotated as 'hypothetical protein domain protein' and gene symbol set to ’None’
Where rapsearch2__uniref100__trus…
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We would like to map the enzymes in Sandbox to reactions in Rhea. One possible pathway:
* Enzymes in Sandbox have UniProtAcc
* From UniProt get the EC number for this protein
* With the EC number w…