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Dear developers,
Congratulations on cellphonedb v5! I love the fact that this version includes the "classification" and "directionality" metadata.
I was wondering, in the interactions where DPP4…
dnjst updated
12 months ago
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Hello,
Please could "indirect" and "unknown" be added
as "interaction type"s in the controlled_vocab.? (I
did email this around a couple of months ago, so
apologies if this has already been address…
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https://doi.org/10.1101/099358 (http://biorxiv.org/content/early/2017/01/10/099358)
> Many biological processes are governed by protein-ligand interactions. Of such is the recognition of self and n…
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Hello!
This is more of a question than an issue.
Let's say we want to simulate a protein-ligand complex. For the protein we use the Amber forcefield and for the ligand GAFF. However, the ligand…
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Hi, thank you for developing this database. I have mouse single cells data and I want to use your database to do analysis using CellPhoneDB. CellPhoneDB needs protein, gene, complex, and interactions …
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The BioGRID database:
https://thebiogrid.org/
has recently started curating phenotypes resulting from CRISPR screens in human cell lines and have compiled the results of their curation into the …
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## 🐛 Bug
In the command:
tasks, datasets, transformers = deepchem.molnet.load_pdbbind(featurizer=acf,
save_dir='.',
…
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Hello @akundaje and @leepc12 ,
I wanted to use this pipeline to analyze ultra-low-input, native ChIP-Seq samples [ULI-NChIP](https://www.nature.com/articles/ncomms7033) looking at histone modifica…
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Dear David,
I hope this message finds you well.
I am encountering problems while generating the combinatorial pharmacophore library. I have successfully acquired the super_pharmacophore.pml file…
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These seem to be needed to formally annotate binary interactions resulting from spoke and matrix expanded complexes. It looks like they've got to go to either ' experimental interaction detection' (pr…