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How should a mixed sample be reflected in the annotation? For example, there is a separate analysis of different individuals and all pooled together or just a commercial plasma sample from lots of dif…
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I have a question about [mandatory fields, especially for human tissues](https://github.com/bigbio/proteomics-metadata-standard/tree/master/experimental-design#sdrf-templates). I have looked at a few …
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I have a text file which is supposed to be my maxquant peptide.txt file (I say supposed because I have not personally run the maxquant analysis, but I was given the output file). It is tsv file and co…
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Hi all:
We have discussed before in other topics this issue #267, #218 but never as the central point of the discussion. I have presented today the format to HUPO-PSI, and one suggestion is to mak…
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I am very much interested in detection of peaks in the m/z space after infusion experiments with FTMS instruments, in particular Orbitraps. I looked at the vignette `Grouping FTICR-MS data with xcms` …
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Re: [https://github.com/openjournals/joss-reviews/issues/2259](https://github.com/openjournals/joss-reviews/issues/2259) I'll be putting review comments here.
I'll start the full review shortly, b…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/DavisLaboratory/msImpute
Confirm the following by…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ebecht/infinityFlow
Confirm the following by edit…
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- [ ] Christopher Gerner
- [ ] Joint MCP with Myriam Ferro's on sub-tylakoids localisation (3 biol reps, 2 techn reps). They should have MSnSets ready.
- [x] Christian Ahres bacteria (dynamic) data …
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# Describe the problem
* **I'm submitting a:**
- [x] question
* **My MSFragger use case:**
- [x] _Open_ search (large precursor mass tolerance)
** _put your general problem descripti…