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Happens consistently with all tutorial and test files.
Distribution plot files are created but have no content
Example here for tutorial1
The seems to be my final issue ... (hopefully) ... many t…
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As of SCT version https://github.com/spinalcordtoolbox/spinalcordtoolbox/commit/bb479d82ea1e2076dd50343177056a61bd17e260 (install dev version until SCT v6.4 is released)
Syntax:
```bash
# Cord se…
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Command used:
```
./cwlexec /home/johnsoni/Innovation-Pipeline/workflows/QC/qc_workflow_wo_waltz.cwl ~/Innovation-Pipeline/test/workflows/EZ_QC_test.yaml
Error: Could not find or load main class …
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I've been trying to configure the pipeline to only run specific types of processing (anatomical only, preprocessing only, no nuisance regression, etc.). When I just set all the run* fields (runALFF, r…
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### Title
dMRI QC: implementation and automation
### Leaders
Dr. Thomas Close
Dr. Mahdieh Dashtbani Moghari
### Collaborators
Dr. Thomas Close
### Brainhack Global 2022 Event
Brainhack Austral…
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Hello, I have successfully run the dhcp-structural-pipeline with the docker image.
However, when I tried to run the structural-pipeline-measures with the docker image using the command:
**"sudo do…
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The [original mapping](https://github.com/bmir-radx/radx-project/issues/48#issuecomment-1974154423) of variables in the Global Code Book to ontology terms included the following terms from GSSO and HP…
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I am running pipeline version: v1.9.2. My pipeline runs till atac.macs2_signal_track, then the next atac.qc_report is not triggered. I have following questions about the pipeline:
> 1. Is there …
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After working on #1 I noticed that the running of the pipeline should be documented, including how to do the QC. Few things I've noted:
- [ ] Detail how to launch the pipeline
- [ ] Detail how to …
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hi there,
I am a ALLOFUS user, was trying to run this pipeline in the workbench. i created my own config file, like this,
%%writefile allofus_test.config
workDir = "gs://fc-secure-203a5a33-…