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`decoupleR::get_collectri()` returns always human regulons, no matter what organism is specified:
```
> xx yy zz all.equal(xx,yy)
[1] TRUE
> all.equal(xx,zz)
[1] TRUE
```
I'd expect that…
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Hi, I am currently trying to familiarize myself with the ICA. So I am not entirely clear what result I can expect from it. However, I noticed that the resulting A-matrix consists of zeros or numbers t…
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https://mp.weixin.qq.com/s/-ljyLbXIbU1BU9yqdCD3Kw
ixxmu updated
3 months ago
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E.g. Convert regulons in pyther/data/regulons from .tsv to .pkl
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https://mp.weixin.qq.com/s/w0lUALxJMEoHwSximV4e0g
ixxmu updated
8 months ago
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https://mp.weixin.qq.com/s/Wxwj9oS1INEjWxQDXebvHw
ixxmu updated
4 months ago
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https://mp.weixin.qq.com/s/XVndy1l2azhMsRDUScpoXw
ixxmu updated
3 months ago
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When I run pyScenic, I get the loom_scenic file. And I import this file to R.
regulons_incidMat
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### Discussed in https://github.com/aertslab/scenicplus/discussions/131
Originally posted by **SidG13** March 16, 2023
Hi,
I'm running into an issue related to the "Formatting eGRNs" step o…
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Dear Aertslab,
First of all, congratulations on developing pySCENIC, such a nice pipeline and I am using it more and more in my projects!
I have a couple of questions about preparing `loom` file…