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**Description**: Fish exclusive to day/night are not implemented properly
**Current behaviour**: You can fish any fish at anytime (i.e. Raw Sunscale Salmon at 5:24 am)
**Expected behaviour**: Ra…
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JupyLab/Jupyter tool issues collected from 2024 Bioinfo Bootcamp preparation and trying to get these tutorials to work after updates:
Please see notes here about get/put issues & installation issu…
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Tried running prokseq via docker, most recent version of docker and MacOS. Salmon isn't found?
ran:
docker run -it snandids/prokseq-v2.0:latest
python scripts/prokseq.py -s samples.bowtie.PEsam…
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This is a suggestion.
metawrap-mg is totally outdated. Moreover, all of dependencies can actually work with python 3 without revising module scripts of metawrap.
Prepare a cleaner conda enviro…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
The issue existed in both bulk and single-cell mode
**Describe the bug**
When using Salmon to quantify non-red…
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Idea! Recipes to use salmon bubbles.
CaviUr: Egg, Salmon bubble (2), Uritz CrackUr (make in saucepan)
Uritz CrackUr: Flour, plank (make with tinkertool)
Sparkling Salmpagne: Salmon bubble, salmon, l…
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Hello,
I've attached a screenshot of my Trinity script:
When running Trinity, I run into an issue at Phase 2: Assembling Clusters of Reads. I've attached a screenshot of this issue:
Could…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
salmon
**Describe the bug**
I was trying to do salmon quant on multiple bam files together but got the error.
…
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`salmon` is found from `bioconda` but ...
```
$ conda search salmon
Loading channels: done
# Name Version Build Channel
salmon 0.5.1 …