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Implement deployment in supercomputers using Singularity containers
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It would be amazing if there could be a `mkSingularityImage` function for [singularity containers](https://docs.sylabs.io/guides/3.5/user-guide/introduction.html).
As far as I can tell, implementa…
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The Gurobi API can be used to invoke Gurobi with license information passed through environment variables rather than license files. This would make it easier to deploy OptLang with Gurobi in containe…
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Incoming perspective: A few months back I did some preliminary work on introducing Singularity into one of my environments, but I haven't touched it since then and I've forgotten some things.
http…
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## Motivation ##
As discussed in #2156, this is just a little summary of some hiccups that Windows users have bumped into dealing with the management of tempfiles or deleting files while running Spik…
zm711 updated
1 month ago
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Neurodocker (https://github.com/ReproNim/neurodocker) is a Python-based tool for easily generating Singularity and Docker container definitions from shell scripts. Pkg2 has had support for parsing the…
Vbitz updated
5 months ago
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Hello! Thank for making this action! I am close to getting it working for my project, but am running into the following error message. The `setup-singularity` action step completes fine, but when sub…
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We want to run some of the [Toil](https://toil.readthedocs.io/) interpreters for WDL and CWL with TES under Funnel. We run TES jobs by running Toil containers, which we then pass a command through to …
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### Description of feature
Break out the feature for downloading singularity containers from nf-core download and put it in it's own command line. When running nf-core download the tool could incorpo…
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Biocontainers deliver great value. In addition to small size at the reasonable cost of not always having access to (admitedly incorrectly) expected standard versions of linux tools such as awk, sed …