csiro-crop-informatics repset issues

csiro-crop-informatics / repset

Reproducible evaluation of short read mappers

GNU General Public License v3.0

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Google cloud execution

#65 rsuchecki opened 4 years ago
0
Update containers

#64 rsuchecki opened 4 years ago
1
Capture warnings in JSON/report

#63 rsuchecki opened 4 years ago
0
Feature/ci tests

#62 rsuchecki closed 4 years ago
0
Feature/collect versions

#61 rsuchecki closed 4 years ago
0
container images for Rmd rendering

#60 rsuchecki opened 4 years ago
0
Create main.yml

#59 rsuchecki closed 4 years ago
0
Docker/renderer/0.4.1

#58 rsuchecki closed 4 years ago
0
report generation

#57 rsuchecki closed 4 years ago
0
Added json2csv process

#56 rsuchecki closed 4 years ago
0
Feature/task resources in meta

#55 rsuchecki closed 4 years ago
0
catchup

#54 rsuchecki closed 4 years ago
0
release generation update

#53 rsuchecki closed 4 years ago
0
Validity of run-time comparisons

#52 rsuchecki opened 4 years ago
0
updated release and artefact upload

#51 rsuchecki closed 4 years ago
0
onComplete fails with NXF_VER newer than 19.04.0

#50 rsuchecki closed 4 years ago
0
Separate documentation form README?

#49 rsuchecki opened 4 years ago
0
Results, artefacts, persistence

#48 rsuchecki opened 4 years ago
1
Alternative read simulator?

#47 rsuchecki closed 4 years ago
0
Additional mappers?

#46 rsuchecki closed 4 years ago
1
Further reproducibility wish-list

#45 rsuchecki opened 5 years ago
0
Failed parallel singularity pulls

#44 rsuchecki opened 5 years ago
3
Add CI

#43 rsuchecki closed 4 years ago
2
Results presentation v2

#42 rsuchecki opened 5 years ago
1
prot2dna

#41 nathanhaigh closed 5 years ago
1
Separate primary from secondary and supplementary alignment correctness stats

#40 rsuchecki closed 5 years ago
1
Gene-level rna2rna evaluation?

#39 rsuchecki opened 5 years ago
2
Different versions of the same tool

#38 rsuchecki closed 5 years ago
0
RNF evaluation slow

#37 rsuchecki closed 5 years ago
2
Additional genomes for evaluation

#36 rsuchecki closed 4 years ago
1
Dynamic resource allocation or exposed max resources params

#35 rsuchecki closed 5 years ago
0
Include pseudoalignment approaches

#34 rsuchecki closed 5 years ago
1
Docker/rnftools/0.3.1.3

#33 rsuchecki closed 5 years ago
0
Explicit package versions install in rscipts.Dockerfile?

#32 rsuchecki opened 5 years ago
0
More recent rnftools containers not fully functional

#31 rsuchecki closed 5 years ago
0
Multiple alignment runs/settings for a given tool/index

#30 rsuchecki closed 5 years ago
0
Get basic stats for any set of real reads

#29 rsuchecki closed 4 years ago
0
Read simulation from any genome and alignment eval

#28 rsuchecki closed 5 years ago
2
Capture failed task in report?

#27 rsuchecki opened 5 years ago
0
Results presentation

#26 rsuchecki closed 5 years ago
1
Further modularise

#25 rsuchecki closed 4 years ago
1
more permissive licence?

#24 rsuchecki closed 5 years ago
0
Docker/rscripts/0.5

#23 rsuchecki closed 5 years ago
0
Points for paper

#22 rsuchecki closed 5 years ago
0
put this work in context of eLIFE's reprodcible article

#21 rsuchecki closed 5 years ago
0
Singularity builds

#20 rsuchecki closed 5 years ago
2
Report/manuscript rendering if output file exists

#19 rsuchecki closed 4 years ago
0
Container versions may not be enough - combine with commit SHA?

#18 rsuchecki opened 5 years ago
4
Capture workflow metadata

#17 rsuchecki closed 5 years ago
3
Docker/renderer/0.2

#16 rsuchecki closed 5 years ago
0