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https://doi.org/10.1101/433763
> Recent advances in deep learning, particularly unsupervised approaches, have shown promise for furthering our biological knowledge through their application to gen…
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Is there a formula or ratio of how the txnE and txnStrength parameters should relate to the bin width? Should these always kept at default value or is there a rule of thumb for this parameter?
Quot…
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Please keep this checklist for curation of a new study.
- [ ] [create a issue on datahub](https://github.com/cBioPortal/datahub/issues/new) before curating a study (one issue per study) and copy th…
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Hello,
it is quite unclear if the parameters being set have an impact on copy number calling. We've been doing some benchmarking altering for example `--txnE` and its pair option, and while we can …
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Hi @neuronflow ,
Thank you for sharing the implementation of the blob loss.
I was wondering if the method could be applied on compound losses, such as DICE+CE. In addition, does the current code…
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Collection: https://doi.org/10.7937/K9/TCIA.2017.dwehtz9v
Data description: These MRIs are pre-operative examinations performed in 159 subjects with Low Grade Gliomas (WHO grade II & III). Segmenta…
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Hi, I am currently working on applying diffusion models for brain tumor segmentation, and I have some questions regarding your experiments on the BraTS2021 dataset.
1. Your paper mentioned that you…
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This is a pretty well known bug. Some people say it is user error, regardless I think patching it would be a good idea.
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#### What data file(s) does this issue pertain to?
`pbta-histologies.tsv`
#### What release are you using?
`release-v18-20201123`
#### Put your question or report your issue here.
For…
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Dear @sevimcengiz
I'm working on metabolite maps of brain tumors. I have ensured that all prerequisites and dependencies are met, including MacOS Big Sur 11.7.6, FSL version 6.0, MATLAB R2020b, an…
smcch updated
8 months ago