-
**The python code in my cmd(Command Prompt) says that the python code is wrong**
I think there must be something wrong with the python code.
-
Hi,
I have built a WDL workflow which works well with SLURM but now I am trying to get it to be able to be run on a standalone server.
I have Slurm as my provider and have created one for Local…
-
To better allow for iterative testing of the Optimus pipeline, we want a workflow test that only runs optimus (vs running as an integration test) and validates the workflow output. Using the dsde-pipe…
-
Part of the #2942 work involved converting the config backend to use the WOM API. The config backend uses WDL to define its commands but it does not have a workflow (it's a WdlNamespace with a bunch o…
-
When having a tool that sometimes creates a group of files or not (depending on the data sometimes even) a optional struct in the output would be nice to have.
As a user This is nice to have but as…
-
After installing miniwdl, I ran run_pyclone_vi_example1.sh and got the following error message. How should I deal with this?
Traceback (most recent call last):
File "/home/miniconda3/bin/miniw…
-
Hi,
I am using rabix + funnel with AWS batch backend to process data.
The expectations are to be able to process hundreds (or even thousands) of datasets concurrently.
Are there any considerations …
-
**Describe the bug**
As was brought up in the Dockstore Slack, when I run a WDL on the Dockstore CLI, files are created all over the place. It doesn't seem intended for the Dockstore CLI to put output…
-
https://github.com/ianfore/FASPclient has example python code to
1. query data
2. obtain urls via DRS
3. run a compute
It currently queries BigQuery directly and submits a pipelines directly to …
-
**Describe the bug**
Due to the nature of this bug I can't be sure if it still exists in 1.10.0, but it does exist in 1.9.0 so it might be worth looking into. Basically, when using Dockstore's recomme…