issues
search
ncsa
/
phyloflow
Phylogenic tree computation and packaging with Docker, WDL
MIT License
2
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Error when running run_pyclone_vi_example1.sh
#49
nakane-scc
opened
2 years ago
3
Cb3 docs
#48
matthewberry
closed
2 years ago
0
Cb3 docs
#47
matthewberry
closed
2 years ago
0
Cz/fix standalone
#46
ChuanyiZ
closed
2 years ago
0
allowed null tree score
#45
matthewberry
closed
2 years ago
0
added ECR docs to install.md
#44
pgroves
opened
2 years ago
0
Cz/aggregate json
#43
ChuanyiZ
closed
2 years ago
0
Setup repo for independent Viz
#42
pgroves
closed
2 years ago
1
updated the visualization prototype
#41
pgroves
closed
2 years ago
0
added a build for the viz prototype
#40
cholson
closed
2 years ago
0
public url for chad's current vis demo
#39
pgroves
closed
2 years ago
1
Cz/fix issue#32
#38
ChuanyiZ
opened
3 years ago
1
Sort out Cromwell vs. Miniwdl with installation instructions
#37
pgroves
opened
3 years ago
0
add VEP workflow
#36
ChuanyiZ
closed
3 years ago
2
vep-task only works with Cromwell, not miniwdl
#35
pgroves
closed
3 years ago
1
vcf_transform sometimes pulling published image even when newer version has been built locally
#34
pgroves
opened
3 years ago
0
Official VEP image doesn't work with miniwdl (but does work with cromwell)
#33
pgroves
opened
3 years ago
0
Physigs input transformer
#32
pgroves
opened
3 years ago
0
QC: Does AML output we generate match the paper
#31
pgroves
opened
3 years ago
0
Document parameters using wdl metadata
#30
pgroves
opened
3 years ago
0
removed pyclone. standardizing on pyclone_vi
#29
pgroves
closed
3 years ago
0
Dockstore and Amazon ECR integration
#28
pgroves
closed
3 years ago
0
Automate pushing README's to ElasticContainerRegistry repo's for docker images
#27
pgroves
opened
3 years ago
0
Remove pyclone as an option (always use pyclone-vi)
#26
pgroves
closed
3 years ago
1
Fix tabs/spaces in wdl files
#25
pgroves
opened
3 years ago
0
Phyloflow full workflow for summer
#24
pgroves
opened
3 years ago
1
Terra account connected to our GCP account
#23
pgroves
closed
3 years ago
2
Entire example1 workflow on Terra
#22
pgroves
opened
3 years ago
0
SPRUCE on Terra
#21
pgroves
closed
3 years ago
1
VEP official docker image as a WDL step
#20
pgroves
closed
3 years ago
2
cz/physigs
#19
ChuanyiZ
closed
3 years ago
0
Document example files for viz user-stories
#18
pgroves
opened
3 years ago
0
Multisample SMV support
#17
pgroves
opened
3 years ago
0
copy number abberation support
#16
pgroves
opened
3 years ago
0
Specify git SHA when checking out from github in Dockerfiles
#15
pgroves
opened
3 years ago
0
cz/cluster transform and SPRUCE support
#14
ChuanyiZ
closed
3 years ago
0
Docker crashes in step 2 (pyclone)
#13
ChuanyiZ
closed
3 years ago
1
Make PRs target 'develop' branch instead of 'master'
#12
pgroves
opened
3 years ago
1
cz/improvements in vcf_transform
#11
ChuanyiZ
closed
3 years ago
0
Document pull request process
#10
pgroves
closed
3 years ago
0
Fix 'copy number' params for pyclone
#9
pgroves
opened
3 years ago
0
Specify version numbers for docker, conda, miniwdl
#8
pgroves
opened
3 years ago
0
Create contributing.md
#7
pgroves
closed
3 years ago
1
Pg/pyclone
#6
pgroves
closed
3 years ago
0
Create LICENSE
#5
pgroves
closed
3 years ago
0
Need LICENSE file in toplevel
#4
pgroves
closed
3 years ago
1
Pg/pyclone
#3
pgroves
closed
4 years ago
0
Create manual-helloworld.yml
#2
pgroves
closed
4 years ago
0
Pg/pyclone
#1
pgroves
closed
4 years ago
0