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How to run the provided Inference code with custom set of Antibody and Antigen PDBs?
Should it be preprocessed to be in DB5 format? How to do that?
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I am not sure about analyzing some data related to the binding of antibodies and antigens with the two-component 3D model. If I wanted to find the fraction bound, would I need to experimentally find t…
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When I use ANARCI to number antibodies, sometimes this error occurs.
And this error always appears at the end of the program.
What should I do?
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## Problem statement
Identify potential improvements to our documentation on creating transforms
## Acceptance criteria
- [x] Identify gaps and potential improvements to our documentation on creatin…
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Top 3 candidates as determined by RICE modeling were:
1. Model organisms
2. Epigenomics
3. Antibody detection of protein abundance
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The cutoffs for defining background droplets were based on the DSB tutorial suggestions. I recently examined the ADT distributions for many tissue libraries and found that a small number of libraries …
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We should get as much information as possible from the RRID database.
At least for antibodies.
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Hello,
I was following the "Pratope-epitope Docking using AbDock" pipeline inside the AbDock folder. When executing the script optimize_ab.py, the following error came up:
$ python optimize_ab.py…
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I'm trying to predict the protein structure of an antibody using AlphaFold, but I'm unsure how to specify the disulfide (SS) bonds to AlphaFold. While I can see the disulfide bonds in the Uniprot feat…
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About your locally hosted example
```
from paperqa import Settings, ask
local_llm_config = dict(
model_list=[
dict(
model_name="my_llm_model",
litellm_pa…