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I have an Ubuntu 20.04 and followed the package install instructions at https://github.com/Gaius-Augustus/Augustus/blob/master/docs/INSTALL.md#HTSlib
bam2wig fails to compile. (Not a problem for me …
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EDIT: The samtools-1.9 issues are resolved. 1.10 still has some outstanding problems.
This may be the same problem as #1244.
#### Are you using the latest version of [samtools](https://github.co…
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Dear Samtools developers,
Samtools 1.1 is packaged in Debian, where building it has been attempted on multiple hardware architectures. Issue #268 already reports failures on MIPS.
On ARM as well, th…
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In vcf_clean_and_filter.py we rename the chroms / contigs etc.
We should also rename the header as that is giving us lots of errrors/warnings downstream
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I suppose this package is the same as `GeneticVariation.jl`, but any chance this package will support multithreaded read? The standard
```julia
reader = VCF.Reader(open("example.vcf", "r"))
for rec…
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Hello Everybody,
I use biogo to retrieve data from tabixed file for a VCF file. I use go routine and each routine use a preloaded index and a specific access to the tabixed file (for exemple 8 rout…
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` @jbrowse/cli/2.15.4 linux-x64 node-v18.12.1`
i'm a bit lost with supporting bgzip fasta
```
Error: problem decompressing block: incorrect gzip header check
../../../node_modules/@gmod/b…
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```
What steps will reproduce the problem?
1. ./configure --with-bam_inc=/home/saracardoso/Programs/samtools-1.0/
2.
3.
What is the expected output? What do you see instead?
checking for g++... g++
c…
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Hi,
I am observing a performance issue with the strong-scalability of `async_input_buffer`
Here are the code snippet and observations of the test case compiled with -O3 flag.
SeqAn3 Version: **3…
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Hello dear @csw and @pjotrp
As I mention before I am working in compression of MAF file and after installing your plugin I was trying to do some simulations. I am mainly using datasets from the golde…