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I am pretty sure that I have a maintenance reaction, but Daniel doesn't seem convinced. Check that the reaction is there, and what effect it is having in COBRA and in COMETS.
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#### A reconstruction is a the broad database of reactions, and becomes a model when it is initialised with constraints.
> The difference between a reconstruction and condition-specific models deri…
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Someone took the time to analyse how frequently the annotations are used (I think for SBML mostly but it's the same for us):
https://www.ebi.ac.uk/biomodels/COMBINE-annot/BioModels-data-collections…
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VOS7 RAM consumption is much bigger than expected according to recommended `NumberOfBuffers` and `MaxDirtyBuffers` in `virtuoso.ini` according to amount free RAM
![image](https://f.cloud.github.com/…
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---
id: pysces
version: 1.2.0
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_PySCeS/42b2e7787368e1db359ae33368ba0fa80b7eaa63/biosimulators.json
specificationsPatch:
…
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The goal is to pre-populate Terarium with a significant number of "high quality" models from an existing repository such as [BioModels](https://www.ebi.ac.uk/biomodels).
The models that we want to in…
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**Summary !!!**
- **BioModel Name**: Liu2023 - _Acinetobacter baumannii_ growth inhibition prediction with Deep Learning .
- **BioModel Tag**: fair AIML, Machine learning model
- **Metadata …
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As pointed out by @matthiaskoenig [here](https://github.com/sys-bio/roadrunner/issues/898#issuecomment-950869708) and @luciansmith [here](https://github.com/sys-bio/roadrunner/issues/146#issuecomment-…
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We use spinner to show the process of both file loading and layout. Ideally, spinner starts when we start loading a file or applying layout and it stops when file has loaded or layout has finished. Ho…
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## Description
I'm trying to learn about OXO and I have set up a local instance using docker. I'm following the docs, and I want to create `datasets.csv` and follow the rest of the documentation walk…