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pip install cellbrowser
gets me version 0.7 (btw interesting because this github repo only goes up to release 0.6)
in cellbrowser.py
function mtxToTsvGz
these lines went missing, which kills the…
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Hi Maximillian,
thanks for this great tool! We are using it a lot in the Sansom lab. I'm trying to implement it into our pipeline but it seems like the init task always exits with the status 1. I've …
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Since the top-level list of datasets is also a collection there's a message, mostly covered by the dataset list on the page:
```
The collection 'All Datasets' contains 21 datasets. Double-click …
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Each generated abstract has a "direct link" that goes to an address in the cells.ucsc.edu domain, but since we're hosting our data locally, those links don't work for us.
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I've installed cellbrowser locally (cellbrowser 0.5.49 with Apache httpd 2.4.41 on Fedora 29) and, after converting some Seurat files, I've found that I can view them perfectly well with Chrome and Sa…
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For one particular dataset, when I'm building my browser I get this error:
```
INFO:root:current input matrix looks identical to previously processed matrix, same file size, same sample names
INF…
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Hi maximilian, in your Seurat code in the docs, it should be library(data.table) not library(data.tables) for the fread function. I don't believe there is a data.tables package but data.table is popul…
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Any time adata.obsm.dtype is accessed (only happens with non-Scanpy functions that I have notices), an error is thrown: **'AttributeError: 'AxisArrays' object has no attribute 'dtype''**
So far I c…
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The info pages for the autism dataset are off.
https://cells.ucsc.edu/?ds=autism
Abstract
This dataset does not seem to have a desc.conf file. Please read https://cellbrowser.readthedocs.io/dataD…
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@mspeir @mxposed
I'm about to add collections of datasets. (Matt: similar to a supertrack.) It's like an empty dataset that merely points to other datasets. The whole thing is entirely optional.
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