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**Desktop (please complete the following information):**
- OS: Ubuntu 20.04 VM
- CellProfiler Version 4.2.0
- source
- pypi
**Describe the issue**
When I follow the installation instructio…
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From http://forum.cellprofiler.org/t/table--link-tables--already-exists-error/4126
Greetings to all;
Using CPA v2.2.1 with MySQL, I'm experiencing the following series of errors.
Before link ta…
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I used the files posted [here](https://github.com/CellProfiler/CellProfiler/wiki/Conda-Installation) to install cellprofiler4, but when I run it on conda, it runs with an error message.
> (cp) [use…
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From this Forum post: http://cellprofiler.org/forum/viewtopic.php?f=12&t=1782&p=9274#p9274
He had table_id as CHAR and CPA seems to have expected INT. Needs verification, It should be VARCHAR, and/o…
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Our team has been plowing through various integration work with CellProfiler, Bio-Formats and OMERO. This involves utilizing the existing CellProfiler-OMERO integration in both a classical user focuse…
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@d33bs - consider applying pycytominer-transform to the existing SQLite data here to test your approach with real world data.
We would be particularly interested in comparing the results from `pycy…
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Hello, I am trying to convert an `nd2` file containing several field of views with 6 channels each and a variable amount of slides (it is quite big, around 18 GB).
When I read the metadata and get th…
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**Describe the bug**
I am attempting to generate z-projected images from large `nd2` files (>80GB). When I try running in headless mode, the CellProfiler pipeline stops at the "Metadata" section an…
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Hello to test your pipelines in the cellprofiler, I see that you select the starting images depending on the cell that will appear in each image.
Could you provide the folder where the starting image…
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Right now, cpa quits suddenly with the following error msg (unseen if not using cli)
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Traceback (most recent call last):
File "cpa.py", line 529, in
app = CPAnalyst(redirect=False)
File …