-
See https://github.com/geneontology/go-ontology/issues/13302
It looks like GO is proposing to treat this as a subtype of SO:0000234 ! mRNA
-
Hi! I have been trying to do some downstream analysis of my circRNAs, and reached as far as module 12 with it. This was as on Friday, 28th May. Now when I am using the same R script as the package sug…
-
Hello,
I'm using CircCode, such a powerful tool, but I have problem, every files I used here are from your example.
When I run: python3 make_virtual_genomes.py -y config.yaml, the err is:
No. 1 l…
-
Hi Simon,
Thanks for making this great open-source software!
Here is one issue I am currently having with analysis of circRNAs:
After merging back-spliced junctions from three different circ…
-
**Describe the bug**
Hello, I am using DCC to identify circRNAs from three samples, but I got a bug:
[DCC-2020-02-25_1123.log](https://github.com/dieterich-lab/DCC/files/4248431/DCC-2020-02-25_1123.…
-
I was reading the user guide and I saw that `--tool` is described as "User provided tool name for circRNA prediction" and I was wondering if this was any name the user would like to use to refer to th…
-
Hello! I have already created a annot.list, and as far as I understand, if I have 4 samples for my experiment, this is what I do:
```
cdata
-
Hi,
Thanks for the great tool.
I run the analysis using your tool but in the results, I do not have the exon number and the related transcript. Is there a way to retrieve which are the exons in…
-
Hi,
I've been working on a set of samples using the differential expression analysis for biological replicates. All steps work fine until I get to using CIRI_DE_replicate, where I get the followin…
-
When running this R code in Rstudio:
Step2.1_Relation_circRNA-miRNA
it showed the error message:
Error in is_character(x) : object 'module_DEmiRNA' not found