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BIMSBbioinfo
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ciRcus
An R package for annotation of circular RNAs
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genomicRanges issue
#57
marvel479
closed
4 years ago
6
summarizeCircs Issue
#56
marvel479
closed
4 years ago
1
Add GRCz11 assembly
#55
mschilli87
opened
4 years ago
1
New genome assembly
#54
marvel479
opened
4 years ago
9
CI
#53
frenkiboy
closed
5 years ago
0
Print error if all files empty
#52
frenkiboy
opened
5 years ago
0
Add rn6 support
#51
mschilli87
closed
6 years ago
2
Cleanup leftover code
#50
mschilli87
opened
6 years ago
4
[wrong base]: cleanup leftover code
#49
mschilli87
closed
6 years ago
0
gtf2sqlite
#48
BaluPai
opened
6 years ago
1
Update dm6 annotation
#47
mschilli87
closed
6 years ago
2
added sorting of BED output
#46
mschilli87
closed
6 years ago
3
reduce annotation reference
#45
retaj
opened
7 years ago
0
add Windows testing
#44
mschilli87
opened
7 years ago
2
add Windows testing
#43
mschilli87
closed
7 years ago
4
Add testing on previous release
#42
mschilli87
closed
6 years ago
4
multiple method tables found for 'rowRanges'
#41
mschilli87
opened
7 years ago
1
get rid of lintr config copy
#40
mschilli87
closed
6 years ago
5
added bedTracks function (incl. tests)
#39
mschilli87
closed
7 years ago
6
resTable documentation describes read summarizeCircs functionality
#38
mschilli87
opened
7 years ago
0
dead code(?): non-existent sample filtering in tests
#37
mschilli87
closed
7 years ago
0
add Windows CI testing
#36
mschilli87
closed
7 years ago
8
dummy commit to prod codecov (again)
#35
mschilli87
closed
7 years ago
2
fixed covr integration with lintr
#34
mschilli87
closed
7 years ago
2
dummy merge to bump codecov
#33
retaj
closed
7 years ago
0
excluded test-loadAnnot.R from coverage analysis
#32
mschilli87
closed
7 years ago
3
added code coverage analysis with covr to Travis
#31
mschilli87
closed
7 years ago
2
Remove commented out code
#30
mschilli87
closed
7 years ago
0
stop relying on specific contig names
#29
mschilli87
opened
7 years ago
1
static code analyis with lintr
#28
mschilli87
closed
7 years ago
3
follow coding style guidelines enforced by lintr
#27
mschilli87
closed
7 years ago
5
make loadAnnotation() accept TxDb object
#26
mschilli87
closed
7 years ago
0
make loadAnnotation() accept TxDb object
#25
mschilli87
closed
7 years ago
1
ratios not calculated in v0.1.4
#24
retaj
closed
7 years ago
0
spare the user of defining CIRI-specific options in summarizeCircs()
#23
retaj
opened
7 years ago
0
make loadAnnotation() work with TxDb objects directly
#22
retaj
closed
7 years ago
1
ciRcus v0.1.4
#21
retaj
closed
7 years ago
0
read CIRI2 input
#20
retaj
opened
7 years ago
1
uniqReadsQC depends on globals
#19
retaj
closed
7 years ago
1
implement merge_bed.py features
#18
retaj
opened
7 years ago
11
improve wobble logic
#17
retaj
opened
7 years ago
0
annotateCircs() returns a variety of gene_id values for circs with both flanks intergenic
#16
retaj
closed
7 years ago
3
[merged] initial travis setup
#15
mschilli87
closed
7 years ago
0
[merged] fixing build warnings/errors (missing documentation)
#14
retaj
closed
7 years ago
9
[merged] added build status to README
#13
mschilli87
closed
7 years ago
2
fixed circ2lin file name substitution
#12
mschilli87
closed
7 years ago
0
minor README changes
#11
mschilli87
closed
7 years ago
0
fixed testCoordinateIndexing
#10
mschilli87
closed
7 years ago
1
linebreaks
#9
mschilli87
closed
7 years ago
1
Error in gtf2sqlite
#8
mlist
closed
7 years ago
2
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