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- [ ] scraper designer
- [ ] normaliser/sectiontagger designer
- [ ] PDF structure deciphering / template maker
- [ ] ami-regex designer
- [ ] summary analysis toolkit (ContentMiner app)
- map-reduc…
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HI Team 11,
Great proposal! Here are some of my feedback and thoughts on it:
1. How is your initial DE analysis going to be different from the original study? What was the pipeline they used and…
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Hi,
I have been trying to use find_enrichment.py to perform an enrichment analysis. I originally tried it with my study but it did not work so I tried it with the data provided on the github page …
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Implement enhanced error handling (fallback plugins and retry) for data enrichment or data analysis plugins:
There should be parameters for each extraction & analysis plugin in the process chain for …
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Hi, the DEBrowser is very useful. howeve,I found that I could not choose some other species, such as cattle, pigs and chickens, when I was doing GO enrichment analysis ? How to resolve this?
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```
DocumentTooLarge Traceback (most recent call last)
in ()
6 er.summarize(db)
7 …
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Hi Vadim,
I just wondered about the following command description in your docs, which I suspect can possibly be misleading:
_**--relaxed-prot-inf** instructs DIA-NN to use a very heuristical pro…
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**Project description**
Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically
significant, concordant differences…
idlip updated
5 months ago
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Frog integrates various NLP modules (for dutch) so perhaps it should be added to the following categories?
* Morphological Analysis
* Named Entity Recognition
* Lemmatization
* Part-of- Speech T…
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DIMet is a bioinformatics pipeline for differential analysis of targeted isotope-labelled data.
DIMet supports the analysis of full metabolite abundances and isotopologue contributions, and allows …