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tanghaibao
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goatools
Python library to handle Gene Ontology (GO) terms
BSD 2-Clause "Simplified" License
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update __init__.py
#308
tanghaibao
closed
3 weeks ago
0
Where to store obo file
#307
Tim-Kirkwood
opened
1 month ago
1
No TAXID for Ecoli and incompatibility of the Ecoli specific annotation file
#306
FH96
opened
1 month ago
0
Extra 'label' node at top of DAG of GO terms
#305
avigailtaylor
opened
1 month ago
0
I couldn't get "regulates" ancestors terms
#304
10myl200
opened
2 months ago
7
Fix obsolete unicode functions from py2 (thanks @aipolly, #266)
#303
tanghaibao
closed
5 months ago
0
Dev
#302
tanghaibao
closed
5 months ago
0
change back to macos-latest
#301
tanghaibao
closed
5 months ago
0
Update README
#300
tanghaibao
closed
5 months ago
0
Fix setup.cfg to include setuptools
#299
iosonofabio
closed
5 months ago
1
setuptools required
#298
iosonofabio
closed
5 months ago
4
Replace super(Class, self) => super()
#297
tanghaibao
closed
6 months ago
0
Add encoding="utf-8" in find_enrichment.py
#296
tanghaibao
closed
6 months ago
0
Error: Unicode Decode Error
#295
yb520abab
closed
6 months ago
2
Fix FTP calls and remove loading_bar
#294
tanghaibao
closed
7 months ago
0
Add test_godag_ecs() per #292
#293
tanghaibao
closed
7 months ago
0
[Question] How to parse .json, .obo, or .owl to get dictionary of enzymes {id_go:{ec_1, ec_2, ..., ec_n}}
#292
jolespin
closed
7 months ago
1
Keeping terms not in DAG
#291
Prunoideae
opened
7 months ago
2
Question about map_to_slim
#290
juanjo255
closed
4 months ago
0
implement graph orientation change (graphviz rankdir)
#289
SchwarzMarek
closed
7 months ago
0
Left to right plot in go_plot.py?
#288
SchwarzMarek
closed
7 months ago
1
goatools v1.3.11 seems cannot handle the header of GAF2.2
#287
jiaow1018
closed
8 months ago
0
Text in GO term box - plotting
#286
LeilaFattel
opened
9 months ago
0
Do anyone know the differences between the enriched results and the purifed results after the GOEA analysis of the GOATOOLS?
#285
Sotdo
closed
11 months ago
2
Added Schlicker's Similarity Measure
#284
Piquipato
closed
1 year ago
1
Add test_multiple_testing
#283
tanghaibao
closed
1 year ago
0
bug fix/enhancement HolmBonferroni correction
#282
RossLabCSU
closed
1 year ago
0
HolmBonferroni correction generates error with certain p-value lists
#281
RossLabCSU
closed
1 year ago
3
Remove extra comma in goea_nbt3102.ipyb (thanks @Pooryamb, #279)
#280
tanghaibao
closed
1 year ago
0
Issue with goea_nbt3102.ipynb
#279
Pooryamb
closed
1 year ago
1
Initial implementation of a central logger (#159)
#278
tanghaibao
closed
1 year ago
0
Better support for obsolete terms (#276, thanks @Maxim-Karpov)
#277
tanghaibao
closed
1 year ago
0
Potential bug: "WARNING: GO:0006379 NOT FOUND IN DAG"
#276
Maxim-Karpov
closed
1 year ago
7
AttributeError In godag/gp_taks.py file
#275
dinavod12
closed
1 year ago
3
Error in making result file
#274
Rhia15
opened
1 year ago
3
Issues with find.enrichment.py when I use the same IDs for study.txt and population.txt
#273
pomorale
opened
1 year ago
1
Optimising go term tests
#272
francicco
opened
1 year ago
0
What's the point of removing genes with identical identifiers?
#271
shelkmike
opened
1 year ago
0
Information content of a custom GO annotation.
#270
ohdongha
opened
1 year ago
1
regarding obsolete terms
#269
Danablesson
closed
1 year ago
0
Update workflow version
#268
tanghaibao
closed
1 year ago
0
Best practices for background gene sets
#267
stanleyjs
opened
1 year ago
3
function unicode and unichr depreciated in python3
#266
aipolly
closed
5 months ago
0
update goea_nbt3102 notebook
#265
siebrenf
closed
1 year ago
0
Conditional tests?
#264
sjfleming
opened
1 year ago
0
Idea: Flag to compute enrichment for user-specified GO terms
#263
DylanSteinecke
opened
1 year ago
0
p_value calculation with fisher_exact
#262
Maryam-Haghani
closed
1 year ago
2
p-value calculation with fisher
#261
Maryam-Haghani
closed
1 year ago
0
Keep on receiving **FATAL: NO POPULATION ITEMS SEEN IN THE ANNOTATIONS in my current work
#260
HelloWorldLTY
opened
1 year ago
0
Different results when restricting background set to only include genes with at least one annotation term
#259
Maryam-Haghani
opened
1 year ago
1
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