-
### Prefix
agrkb
### Name
Alliance of Genome Resources Knowledge Base
### Homepage
https://www.alliancegenome.org
### Description
The [Alliance of Genome Resources](https://www.al…
-
## Discussion Points
- [x] Name change: what should the new name be? And the appropriate short name? All entity IDs should be adjusted accordingly
- [x] naming for samples: is it materials, sample…
-
Hey all!
Thank you for the pseudofinder package! I wanted to ask a few questions regarding pseudofinder for shotgun metagenomes (read length-150bps)
A) If I run the pseudogenefinder using the defa…
-
using conf file:
```
sample:
- gather_vita_vars_gtdb_shared_assemblies
outdir: out
metagenome_trim_memory: 1e9
```
```
$ ls *
```
```
conf.yml README.sh
genbank_genomes:
GCA_000210…
-
Using the [model.yaml](https://github.com/molgenis/rd-datamodel/blob/main/emx/src/model.yaml) file as a starting point, develop a proof of concept using an example dataset. The prototype should demons…
-
Do a round of performance optimization on the Alignments track. Run some profiling, try to figure out where time is being spent, and try to improve the time it takes to render large alignments.
Mai…
-
This could be one of a number of different ways
1. [ ] allow pasting in of a UniProtKB ID in all the various relevant forms (annoton wizards, add individual, TableMode, complex editor), regardless…
-
My germline WGS run completed successfully, however, I double checked the LCR regions using a bedtools intersectBed of the final vcf and the provided LCR.bed.gz, and variants were still present.
```…
-
Should we update the documentation to use a project for the whole genome example rather than use an analysis?
https://tripal.readthedocs.io/en/latest/user_guide/example_genomics/analyses.html
-
Over the last few months, we have developed the new [harmonized data model](https://github.com/molgenis/rd-datamodel). The model was built on Fair Genomes and *lessons learned* from other projects. Th…