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Seems pbclip works well on PacBio data, but is that possible to output fastq file? Thanks a lot
Best
Zhixing
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1. multiplex
2. quality check
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In the current [Support Matrix](https://github.com/disq-bio/disq#support-matrix) there is no mention to the status (currently none) to FASTQ-files. Although HadoopBAM has it but it is not widely used,…
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In some cases, we get FASTQs that have sample barcodes and UMIs in the read name and I we'd like to extract those. Is that possible?
See:
[1] https://help.basespace.illumina.com/files-used-by-bas…
nh13 updated
2 months ago
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Hi, it would be great to have **fastp** wrapped in moshpit since it “_is 2–5 times faster than other FASTQ preprocessing tools such as Trimmomatic or Cutadapt_”. It also has additional functionality f…
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Hi, I have this following error while executing preprocess:
[9c/129f0f] process > baseCalling (guppy-RedOak_WGA-0) [100%] 1 of 1, failed: 1 ✘
[- ] process > concatenateFastQFiles -…
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### Description of the bug
Hi,
I'm trying to run sarek with "mutect2" for variant calling.
Pipeline completes successfully, but the folder "output/variant_calling/" is empty.
It seems like proce…
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I got the error
`/projects/marralab/cshan_prj/clip-seq/racoon_clip-1.1.3/racoon_clip
False
Building DAG of jobs...
MissingInputException in rule fastqc_raw_multi in file /projects/marralab/cshan_…
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`21:47:30 UTC error: Cannot convert undefined or null to object
xTypeError 500: Cannot convert undefined or null to object
at Function.keys ()
at printRoutes (file://./node_modules/.pnpm/f…
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Can Jellyfish read gzipped fastq files and, if not, can uncompressed fastq be piped into Jellyfish.
Thanks,