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gmarcais
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Jellyfish
A fast multi-threaded k-mer counter
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Has anyone actually compiled jellyfish with bindings?
#208
lskatz
opened
1 week ago
7
Can the query subroutine support a large number of k-mer inputs simultaneously?
#207
caixu0518
opened
1 month ago
0
Count both strands' kmer sets
#206
DayTimeMouse
opened
1 month ago
0
Replace asm statements by C code to increase portability
#205
mr-c
opened
4 months ago
0
Difference between reading concatenated PE reads and merging paired end .jf outputs independently
#204
JWrighty97
opened
4 months ago
0
Convert another usage of distutils to setuptools
#203
mr-c
closed
4 months ago
1
Enable build on 32bit architectures
#202
mr-c
closed
4 months ago
3
kff to jff
#201
JosephLalli
opened
6 months ago
0
mer_dna.hpp: line 84
#200
Pentagon03
closed
7 months ago
1
kitsune and jellyfish error "Bloom filter file is truncated"
#199
rmormando
opened
11 months ago
1
out of memory?
#198
biofcallejas
opened
1 year ago
1
Dramatic output difference between version 2.2.10 and 2.3.0
#197
sNO0By
opened
1 year ago
0
Where can I find the 2.0 version of Jellyfish?
#196
jingydz
opened
1 year ago
0
Package to read in binary .jf output file in python?
#195
hangsuUNC
closed
8 months ago
2
How to get the version of jellyfish
#194
bhishanpdl
closed
4 months ago
1
Is there any way to count kmer and get histo on multi-hosts?
#193
zokie
opened
1 year ago
0
Performance regression in Jellyfish 2.3.0
#192
kissake
opened
1 year ago
0
tests/swig_perl flaky - possibly hardware dependent
#191
emollier
opened
1 year ago
0
build failure with gcc-12
#190
emollier
opened
2 years ago
2
Create c-cpp.yml
#189
gmarcais
closed
2 years ago
0
strange error with query
#188
mbiokyle29
opened
2 years ago
3
Fix minor doc typo
#187
heuermh
closed
7 months ago
1
Gzipped fastq files
#186
keenhl
opened
2 years ago
1
Implementing to count ambiguous bases
#185
tu4n-p
opened
2 years ago
0
standalone C++ API for lock-free concurrent hashmap?
#184
colin-heberling
opened
2 years ago
2
Add Jellyfish to Nix package repository
#183
giang-nghg
opened
2 years ago
0
How does Jellyfish behave in presence of ambiguous nucleotides (such as N)?
#182
ashenflower
closed
2 years ago
3
Potential error in documentation
#181
giang-nghg
opened
2 years ago
1
Problem for PacBio Hifi reads in "jellyfish count" command
#180
sakshar
opened
2 years ago
0
Genome masking
#179
xbarvazx
opened
2 years ago
0
configure.ac: protect some md5 macros with []
#178
emollier
closed
2 years ago
0
How do I choose the size parameter
#177
Iven-gif
opened
2 years ago
0
Problem encountered with configure
#176
Jianz9293
opened
2 years ago
0
Jellyfish count runs very slowly on Apple M1 processor
#175
SachinDavis
opened
3 years ago
1
Null characters in text output and missing k-mers
#174
fluhus
opened
3 years ago
0
Failed to open input file
#173
Otis-chan
opened
3 years ago
0
small_mers needs bash
#172
mr-c
closed
7 months ago
1
Enable reproducible build
#171
mr-c
closed
2 years ago
0
Fix whatis entry in manpage (also fix some spelling issues)
#170
mr-c
closed
2 years ago
0
Do not replace random '-L' strings in command line
#169
mr-c
closed
2 years ago
0
How can I get index in reads for k-mers?
#168
zhang570221322
opened
3 years ago
0
How to replicate k-mer file from Jellyfish 1
#167
mladen5000
closed
3 years ago
0
Jellyfish File Specifications
#166
mhorlacher
opened
4 years ago
0
Using jellyfish within C code
#165
asylvz
opened
4 years ago
0
Calculation of genome size
#164
bioramg
opened
4 years ago
5
Prevent orphans fix
#163
cerebis
closed
2 years ago
1
Memory allocation error due to large hash leaves behind orphaned generator processes
#162
cerebis
opened
4 years ago
1
Why is the installed Python library different depending on build method? Re: bioconda
#161
cerebis
opened
4 years ago
4
Piping sequence into jellyfish
#160
gmarcais
opened
4 years ago
1
Compile error on 2.3.0
#159
sjaenick
closed
4 years ago
2
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