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Does anyone could help me to solve the following error when making test:
Processing is finished.
(2019-07-08 15:06:15) Execution of 'python BESST/runBESST'. Command line:
/public/home/zhangxt…
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Hello,
I have issues to link pandora executable with GATB libraries. I tried compiling the code with https://github.com/rmcolq/pandora#installation and https://github.com/rmcolq/pandora/blob/master…
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Hi!
I'm using the gatb-minia pipeline to get the contigs for a couple of datasets that I have. The assembly runs fine until the kmer 121 (I have taken step 10).
When it jumps towards the kmer 1…
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Hi,
gatb-core does not compile any more with AppleClang 10.0.1.1001004 (it worked with AppleClang 10.0.0.10001145)
Here are the error messages:
```
gatb-core/src/gatb/debruijn/impl/BranchingAlg…
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```
[FATAL ERROR] Error opening file unitigs/unitigs.unique_rows.txt
HDF5-DIAG: Error detected in HDF5 (1.8.18) thread 0:
#000: /opt/conda/conda-bld/unitig-counter_1553808433058/work/gatb-cor…
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I run dsk to find kmer counts for a very diverse set of reads. I notice that for a 5mer only 512 5mers are shown. Some of the kmer omitted are highly present in my reads (I know that by doing a simple…
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Per #37, I (and others in my group) are finding that bcalm 2.2.1 in bioconda continues to produce an incorrect cDBG. To reproduce, use [the same procedure](https://github.com/GATB/bcalm/issues/37#issu…
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I received an assertion error for rule `bcalm_catlas_input`. It started running fine, but then there were a series of `-> but not -> ...` statements printed to the screen. It then failed with an asser…
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I'm seeing a few duplicate kmers in my output, which would seem to be unintended according to this statement in the github README:
> ... a k-mer and its reverse complement are considered to be the sa…
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The tool aborted with a segmentation fault. Ran on the high coverage dataset "SRR1298980_1.fastq.gz" (paired end with SRR1298980_2.fastq.gz) from 1000genomes project. Following are the details -
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