GATB gatb-minia-pipeline issues

GATB / gatb-minia-pipeline

GATB Minia assembly pipeline

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issues

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OSError: [Errno 17] File exists

#32 mergi-2674 closed 1 year ago
1
BESST: error: argument -orientation is required

#31 Inexperiencedresearcher opened 3 years ago
3
ZeroDivisionError while running BESST

#30 cimendes opened 3 years ago
1
Question about input file type

#29 YuanwenGuo closed 3 years ago
2
Release package?

#28 levlafayette opened 3 years ago
0
Flag to remove intermediate files

#27 bstamps opened 4 years ago
4
fix #25

#26 cimendes closed 4 years ago
0
BESST: error: unrecognized arguments: fr

#25 cimendes closed 4 years ago
3
GFA output

#24 ekg opened 4 years ago
1
920: syntax error in expression (error token is "920")

#23 osowiecki closed 4 years ago
1
Error with `make test`

#22 nylander closed 4 years ago
3
Add version info on prerequisites

#21 nylander closed 4 years ago
1
Combining multiple libraries

#20 harish0201 closed 4 years ago
5
hdf5 issue - unable to open file

#19 Krannich479 closed 4 years ago
5
create a system link to the contigs of the latest k iteration

#18 Krannich479 closed 4 years ago
2
Problems with assembling the data beyond kmer 127 and other queries.

#17 harish0201 closed 5 years ago
4
Execution of 'perl tools/sga-deinterleave.pl'

#16 Shirley-Q closed 4 years ago
4
Problem with BESST in the pipeline

#15 xbarvazx closed 4 years ago
12
gatb-pipeline requires a Linux 64 bits system

#14 anmwinter closed 4 years ago
2
Patch for issue #12

#13 sletort closed 6 years ago
1
make test failed and number of cores not limitable?

#12 jvollme closed 4 years ago
5
Rustine

#11 sletort closed 7 years ago
2
Bloocoo results used only once in the first minia iteration

#10 sletort closed 7 years ago
2
Add besst_iter option

#9 sletort closed 7 years ago
1
Error with samtools in `make test`

#8 ppericard closed 8 years ago
1
Completed installation step

#7 ppericard closed 8 years ago
1
test if bwa version is high enough

#6 rchikhi closed 4 years ago
0
print minia version in command line help

#5 rchikhi closed 4 years ago
0
check if -out is a folder (it shouldn't be!)

#4 rchikhi closed 4 years ago
0
warn user is not enough free memory

#3 rchikhi closed 4 years ago
0
--no-error-correction needs to appear in the command line parameters help

#2 rchikhi closed 8 years ago
0
save the stdout to a [prefix].log.txt file

#1 rchikhi opened 8 years ago
1