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Hi!
I'm trying to figure out if it's possible to download bam slices for legacy archive.
I've tried this simple command to download BRCA1 and BRCA2 regions from a random case:
`bamfile = slicing(…
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Hi, Thank you so much for this package!
I am trying to re-run a script I have used in the past, and getting an error when trying to convert file_ids using UUIDtoBarcode (although they are the exact…
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Hi,
Recently, I found my downloaded data had problems. I thought the ASCAT data was from only blood samples (germline CNV) but found out that there were mislabeled sample IDs.
This is an example…
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下面的方式是work的
```
library(GenomicDataCommons)
library(magrittr)
file_uuids %
filter( ~ file_id %in% file_ids) %>%
select('cases.samples.submitter_id') %>%
results_all()
# The m…
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Hi, I am quite new to navigating genomic databases and will like to know if the information in curatedTCGAdata representative of all the information in TCGA GDC portal. As I was trying to compare case…
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Today's version of the webapp, no errors in the console. I didn't have time to debug.
![2022-01-11_22-30-14](https://user-images.githubusercontent.com/313942/149059068-e50ad770-8eb7-4acf-9791-dc0de…
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Make View Data at [Provider] button available for the following providers:
Missing:
- [x] Curie-BC : general link https://institut-curie.org/plateforme/curiecoretech-vivo-preclinical-experiments
- [x]…
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Hello!Thank you for your outstanding work!
I was experiencing an error: `PermissionError: [Errno 13] Permission Denied: './gdc-client'` while running the code.
`(venv) (pythonProject) lyl010221…
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https://www.ncbi.nlm.nih.gov/pubmed/29641966
The dataset is on dbGAP (NCICCR: phs001444) and GDC (NCICCR-DLBCL)
- [ ] [create a issue on datahub](https://github.com/cBioPortal/datahub/issues/new…
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Hi there,
I am trying to download the more recent datasets: CGCI-BLGSP, CPTAC-3, BEATAML1.0-COHORT, CTSP-DLBCL1, MMRF-COMMPASS and NCICCR-DLBCL.
All of these give the error message:
"Error in e…