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waldronlab
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TCGAutils
Toolbox package for organizing and working with TCGA data
https://bioconductor.org/packages/TCGAutils
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Inquiry Regarding TCGA Barcode Identification with TCGAutils
#34
Sarigenes
closed
4 months ago
3
Apparent Incompleteness of Subtypes
#33
DarioS
opened
1 year ago
1
getSubtypeMap Returns Invalid Column Names
#32
DarioS
closed
1 year ago
2
UUIDtoBarcode not recognising file_id after R update
#31
JuliaArizanova
closed
2 years ago
3
mapping between case id and protein expression file id
#30
eajeong
closed
2 years ago
2
UUIDtoBarcode
#29
SerifatAdebola
closed
2 years ago
8
mergeColData location in vignette
#28
lwaldron
closed
4 years ago
0
document OncoPrint in vignette and cheatsheet
#27
lwaldron
closed
4 years ago
2
UUIDtoBarcode Returns Only One Record
#26
DarioS
closed
4 years ago
4
Exposed Slack Webhook
#25
gitty8
closed
4 years ago
1
UUIDtoBarcode returning subset of output
#24
LiNk-NY
closed
4 years ago
1
Error if UUIDs from Copy Number File
#23
DarioS
closed
5 years ago
2
Filename Conversion to TCGA ID Incorrect
#22
DarioS
closed
4 years ago
8
qreduceTCGA
#21
LiNk-NY
closed
5 years ago
0
symbolsToRanges: optionally drop unmapped
#20
lgeistlinger
closed
5 years ago
1
systematic colData trimming
#19
lwaldron
closed
5 years ago
3
splitAssays error for LAML
#18
lgeistlinger
closed
5 years ago
7
UUIDtoBarcode returns <0 rows> (or 0-length row.names)
#17
jorisvdhaar
closed
5 years ago
2
TCGAsampleselect when sampleCode has length > 1
#16
lwaldron
closed
5 years ago
0
incorrect argument matching
#15
lwaldron
closed
5 years ago
1
barcodeToUUID error: EXPR must be a length 1 vector
#14
lwaldron
closed
5 years ago
1
barcodeToUUID error: arguments imply differing number of rows
#13
lwaldron
closed
5 years ago
2
splitAssays(acc, sampleCodes = c("01", "10", "11")) fails
#12
lwaldron
closed
6 years ago
1
Installation on R 3.4.0
#11
asmagen
closed
6 years ago
1
extract from ID case the ID files
#10
bioinfo-dirty-jobs
closed
6 years ago
3
Edits to vignette
#9
lwaldron
closed
6 years ago
2
TCGAtranslateID not working?
#8
simomounir
closed
6 years ago
2
gistic2RangedSummarizedExperiment
#7
lgeistlinger
closed
6 years ago
2
getBroadSubtypes
#6
lgeistlinger
closed
6 years ago
1
depends on RTCGAToolbox 2.7.5 -- cannot find!
#5
vjcitn
closed
6 years ago
4
TCGAtranslateID not working?
#4
lwaldron
closed
7 years ago
7
XML dependency not working for HPC
#3
LiNk-NY
closed
7 years ago
0
Update News file to match commits
#2
LiNk-NY
closed
7 years ago
2
Rename package to `BiocInterfaces`
#1
LiNk-NY
closed
8 years ago
0