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waldronlab
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curatedTCGAData
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
https://bioconductor.org/packages/curatedTCGAData
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Use an on-the-fly sampleMap from the data to recover munged RNASeq2GeneNorm data
#60
LiNk-NY
closed
10 months ago
0
munged colnames in RNASeq2GeneNorm data remove data from MAE
#59
LiNk-NY
opened
10 months ago
0
Mutation data on BLCA study [Question]
#58
bblodfon
closed
1 year ago
2
Date of data generation
#57
adomingues
closed
1 year ago
2
cached snapshot data is immutable?
#56
jeffstang
opened
1 year ago
1
Error with version 2.1.0
#55
pipaber
closed
1 year ago
1
RNASeq2Gene values
#54
nargessn
closed
1 year ago
1
miRNA is count data and not log2 expression values?
#53
bblodfon
closed
1 year ago
5
Question about CNA data
#52
bblodfon
closed
2 years ago
1
Reference preprocessing methods
#51
lwaldron
closed
2 years ago
1
Normalization applied in RNASeq2GeneNorm
#50
mlmms
closed
2 years ago
2
Methylation data platform
#49
fedenichetti
closed
2 years ago
2
Represntation of GDC data portal
#48
SerifatAdebola
closed
2 years ago
1
Mutations Almost All Missing
#47
DarioS
closed
3 years ago
1
default version number?
#46
lwaldron
closed
1 year ago
5
Error: failed to load resource name: EH762 title: LGG_Mutation-20160128 reason: 1 resources failed to download
#45
lwaldron
closed
3 years ago
2
Position of new 'version' argument to curatedTCGAData()
#44
hpages
closed
3 years ago
2
Update CITATION
#43
lwaldron
closed
3 years ago
0
high-level binding of colData?
#42
vjcitn
closed
3 years ago
5
error message in curatedTCGAData for retrieving TCGA data
#41
llusayl
closed
3 years ago
6
genome tag for mutation RaggedExperiment seems peculiar
#40
vjcitn
closed
3 years ago
2
bulletproof for missing packages?
#39
vjcitn
closed
3 years ago
1
Download counts (TPM) data?
#38
mherberg
closed
3 years ago
9
exportClass() no longer supported?
#37
michaelSkaro
closed
3 years ago
2
No internet localHub fallback
#36
LiNk-NY
closed
4 years ago
1
More specific progress updates
#35
lgeistlinger
closed
4 years ago
0
Simplified methylation data
#34
pcheng84
opened
4 years ago
5
status of repeated samples from donors in BRCA
#33
vjcitn
closed
4 years ago
2
I run into the following problems when using the curatedTCGAData package
#32
maggiejiangzhao
closed
4 years ago
5
assays of SummarizedExperiments coming as DataFrame (why not matrix?)
#31
lgeistlinger
closed
3 years ago
1
Overlap TCGA samples
#30
vittoriofortino84
closed
4 years ago
1
Missing GISTIC data for SKCM
#29
pcheng84
closed
5 years ago
6
add mention of TCGAutils in curatedTCGAData documentation and pkg doc
#28
LiNk-NY
closed
4 years ago
1
merge data where needed (GBM, OV)
#27
LiNk-NY
closed
3 years ago
1
severe missingness in ovarian pData?
#26
LiNk-NY
opened
5 years ago
3
Order of argument `assays` and resulting ExperimentList
#25
lgeistlinger
opened
5 years ago
0
Error with accessing DNA methylation data
#24
j-lawson
closed
5 years ago
5
systematic colData trimming
#23
lwaldron
closed
5 years ago
1
two BRCA methylation datasets?
#22
lwaldron
closed
5 years ago
2
import/export TCGAutils
#21
LiNk-NY
closed
4 years ago
1
Methylation data of type 'character'?
#20
pdmoerland
closed
5 years ago
4
Conveniencefuns
#19
lwaldron
closed
6 years ago
3
converting Mutations components to maftools-friendly form?
#18
vjcitn
opened
6 years ago
4
issues with `subsetByAssay`
#17
LiNk-NY
closed
3 years ago
4
seqinfo for GRanges elements?
#16
vjcitn
closed
3 years ago
7
"RPPAArrayNULL" in Available Data Types
#15
LiNk-NY
closed
6 years ago
0
Error reading from connection
#14
oricel
closed
6 years ago
14
Viewing Clinical Data Floods Console With Text
#13
DarioS
closed
1 year ago
2
Temporary Data Stored Inside User's Home Directory
#12
DarioS
closed
6 years ago
1
Vignette Loading Library MultiAssayExperiment
#11
DarioS
closed
6 years ago
1
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