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This is a meta-issue recording action items from a review of biomedical articles that cite SciPy and the results of a survey sent to authors of over 50 of these papers. In some cases, we can offer to …
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@dexink
- [x] SPBC660.17 - Schizosaccharomyces specific protein, uncharacterized
-> YGR016W (ER protein), from jackhmmr. Need t double check if more broadly conserved
- [x] (lcb3 removed)/ S…
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Hi, I recently came across ClearNLP and decided to give it a try.
I've used other NLP frameworks in the past and I am positively impressed by the overall quality of yours.
I've found some little bugs …
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Hi,
Thank you for providing this amazing tool!
I've encountered some issues while trying to build a co-expression-based draft network in the 'Regulatory inference' tutorial.
When I execute the …
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My data was on scRNA-seq and scATAC-seq on a group of mouse ILC cells. Following Shilu Zhang's method on github, I used liger to get the clustering results of the cells, but there were some issues tha…
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Hi!
Don't forget to add this part haha :)
hummus_object function results in ' no method for coercing this S4 class to a vector'.
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Dear @PauBadiaM ,
I tried to apply `get_collectri` on `mouse` bulk RNA-seq data however the function returned a human gene regulatory network ids.
which probably shows an error message in the downst…
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https://mp.weixin.qq.com/s/Y203ep6cpR6DyTjoMKgflA
ixxmu updated
2 months ago
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**Submitting author:** @JonnyTran (Nhat Tran)
**Repository:** https://github.com/BioMeCIS-Lab/OpenOmics
**Version:** v0.8.8
**Editor:** @arfon
**Reviewer:** @arfon
**Archive:** 10.5281/zenodo.4731011
…
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### Type
workshop
### Description
COURSE OVERVIEW
This course will introduce participants with the inference and analysis of biological networks from RNA-seq data using R and Bioconductor packages…