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Figure 3: Imputation Filters compared
A.
Imputation Schematic using plink2/SHAPEIT then Joining; only use SNPs
remove NA12878 pedigree variants from the imputation reference file
B.
F…
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We have a two sets `[A x B]` and `[C x D]` of F0 animals which were short read sequenced. The F0 ([A x B] and [C x D] )were repeatedly mated to give `F1` `[AB]` and `[CD]`. The F1 were then mated to…
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I set up my instance like this:
```
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
# follow the command prompts, allowing conda t…
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Hi,
I'm trying to use the RVS code and am having difficulty with learning how to enter in the relevant sequencing data for the affected members of the pedigree. What would be the code for such a func…
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**Is your feature request related to a problem? Please describe.**
Many clinical relevant regions are difficult to sequence via NGS due to low complexity and homology (see #529). Usually, these diagn…
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Jacob and me were wondering if some tool exists that does the opposite of genetic correlations, namely identify loci that are specific for a trait. Say you want to compare summary statistics for bipol…
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https://doi.org/10.1101/092890
> Next-generation sequencing (NGS) is a rapidly evolving set of technologies that can be used to determine the sequence of an individual's genome by calling genetic v…
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The new variant annotation data is available:
- JSON: `gs://ot-team/dsuveges/variant_index_new_json` (7.72 GiB)
- Parquet: `gs://ot-team/dsuveges/variant_index_new` (1.01 GiB)
- New data availa…
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If you have information on the population of origin for any of these variants, it could be really useful to include it in the data files.
Also, allele frequency data must be available for at least …
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### Need
As a hospital geneticist I want:
- As many true variants as possible with as few false positive variants
- As fast as possible
- And as cheaply as possible
The new version of Sentieon:…