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We will maintain a file of terms where it should always be possible to specify "assayed_using" extensions.
To start with lets keep it simple with a single term
"cellular protein localization" (and c…
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`Activity` could represent a particular Molecular function that participates or that is targeted in the causal statement. This information seems to be important when highlighting causality between ent…
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Currently, we generate fingerprints from structure KLIFS IDs.
Add API to generate fingerprint from a PDB ID + indices for 85 binding site residues.
- Rename `kissim.io.data.KlifsToKissimData` to `…
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We are doing a project related to tyrosine kinase protein, in which we need process the docking step with 2 ions Copper instead of zinc. Thus, we need to modify the file AD4Zn.dat. We added the parame…
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Example:
http://purl.obolibrary.org/obo/RO_0002447
has axiom:
`(capable of o is kinase activity o has direct input) subPropertyOf phosphorylates`
this infers entity-entity precise relationsh…
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the following sequence variant types need to be mapped to SO:
+-----------------------------+
| description |
+-----------------------------+
| Conversion |
| Deleti…
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Hi Paula,
Thanks a lot for the detailed README instructing the user how to run your code - and I really like the intuitive way of using the CLI!
#### Procedure
I tried to run the recombination …
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https://www.ncbi.nlm.nih.gov/labs/pmc/articles/PMC452188/
"Rho1 GTPase activates β-1,3-glucan synthases as a regulatory subunit [23–26]. The α-glucan synthase Ags1 is regu- lated by Rho1 and Rho2 GTP…
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Some data set implementations remove duplicates based on all columns and not only based on the columns from the `meta.yaml`.
Duplicate count based on subselected columns from `meta.yaml`:
```
d…
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The 16 columns to the right of Kinase_info, including Transcript_ID1 to Lost_Domain2 are empty in the pegasus.output.txt when running the examples in sample_pipeline_input directory. These columns hav…