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Hi,
I have few queries regarding scanpy.
1. As scanpy is using Louvain Leiden algorithms for clustering which optimize modularity 'Q', so how we can access and print modularity funciton?
2. R…
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I'm coming across more and more graph algorithms that need to sort a vector, and some need to sort a matrix. We have some LAGraph_Sort methods but they are not sufficient.
Sorting a vector or matr…
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I was originally trying to use the `rank_genes_groups()` function in scanpy to get p-values and logfoldchanges between a single condition and a reference condition. My end-goal was to take the DE res…
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While installing monocle 3, i am getting following errors.
1) > py_install('umap-learn', pip = T, pip_ignore_installed = T, force=TRUE) # Ensure the latest version of UMAP is installed
Error in virt…
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While creating environment I get the following error: Can you please help?
```
pipenv install
Creating a virtualenv for this project...
Pipfile: /home/subudhak/Documents/zena_scrnaseq_singleR/ex…
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**Describe the bug**
when I run the command:pyscenic aucell, I got an error about export loom file.I had run it at aertslab-pyscenic-0.10.0.sif and aertslab-pyscenic-0.11.2.sif.It both got the error.…
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Hi,
I’ve been building my cellbrowsers for matrix files for a while now and was working fine but after some update the pipeline doesn’t seem to be working any more.
I’m trying to go from the matrix.…
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### Title
Agreed Reporting Template for EEG Methodology - International Standard (ARTEM-IS): web-app and terminology lexicon
### Leaders
- Anđela Šoškić, Twitter handle: @angelasoskic Matte…
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Hello,
I was considering testing UMAP on single cell gene expression.
I got 3 questions:
~~1. How should I load the data. features (aka genes) as rows and cells as columns or the reverse?~~
The da…
Hoohm updated
6 years ago