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Project Title: Single cell transcriptome analysis of human pancreas reveals transcriptional signatures of aging and somatic mutation patterns.Project UUID: cddab57b-6868-4be4-806f-395ed9dd635aWrangler…
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Hi,
I am trying to run a test with a cell line with a know mutation:
PC9 (NSCLC) cells with EGFR deletion
https://mupit.icm.jhu.edu/MuPIT_Interactive?gm=chr7:55205393
First, I ran the same a…
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Most of analysis require resources or files such as reference genomes, mutational signatures in human cancer,... that are independent of your input data. These files can be big and they should not be …
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Hi!
Is there a way to do somatic calling on multiple samples at once? I have multiple samples from different areas in a tumor of a patient. As part of a phylogenetic analysis, I would like to call th…
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Sections 7 to 10 are a list of dot points and I would like to see the details added. A collaborator is considering using Infinium MethylationEPIC arrays for cutaneous squamous cell carcinoma. But, the…
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Probably a simple approach to visually compare the backbones of the Viridian UShER tree and our pandemic-scale ARG is to leverage the Pango lineage roots, excluding the Pango recombinants. The Pango l…
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Hi, I am trying to use the airr output files for the downstream mutation analysis. The analysis tool (Immcantation suite) can take AIRR-format files as input. The tool needs to read two columns from t…
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### JASP Version
0.17.0
### Commit ID
_No response_
### JASP Module
Mixed Models
### What analysis are you seeing the problem on?
Bayesian Generalized Linear Mixed Models
### What OS are you s…
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**Background**:
* cBioPortal: [cBioPortal](https://github.com/cBioPortal/GSoC/issues/www.cbioportal.org) is an open-source platform for cancer genomics data analysis and visualization. It provides a…
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Previously, as described in #25, we observed four distinct groups in batch 3 data. Interestingly, these four groups seemed to have similar representation of resistant and wildtype clones.
In #25, I…