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This issue arose working on the Biomaterials migration. Assuming a goal is to use "correct" ontology terms for most fields and bundles and use less local terms, we would want to switch terms from loc…
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I might have missed but did not see citation of raw data.
Add this as one sentence at beginning of Data Records
sr320 updated
7 years ago
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Create converter for export to SampleTab (https://www.ebi.ac.uk/biosamples/help/st.html)
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Add REST endpoint to accept CEDAR AIRR instance plus a raw data file and submit it to NCBI's FTP server.
Associated front end task is metadatacenter/cedar-template-editor#558
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as part of the NIAID / NCBI / PATRIC calls, we compared our JCVI (Klebsiella) AMR data to what was at NCBI.
Maulik's mail to the team said
1. PATRIC has only MIC measurements, no SIR values / resis…
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The following are genomes that were in AMR metadata and as far as I can tell are available at NCBI but are missing at PATRIC.
We will need to make sure that the metadata is included when the genomes …
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Use specs laid out by David, Dan, Charlie, lab
DNA/RNA
- subtype
- DNA
- mRNA
- total RNA
- cDNA
- random primed
- oligoDT
- mtDNA
- chip DNA
- chroma…
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Hi Hans, can you do a quick survey of the Illumina RNA-seq data sets that are available for Arabidopsis at the Short Read Archive (SRA) at NCBI? Basically use the Browse function available at http://w…