metadatacenter cedar-submission-server issues

metadatacenter / cedar-submission-server

CEDAR server to handle submissions to metadata repositories

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Fix jaxb2 compile error

#48 johardi opened 3 years ago
0
Fails to compile with Java 16.0.1

#47 martinjoconnor opened 3 years ago
8
Use individual fields for SRA file names

#46 martinjoconnor opened 6 years ago
0
Regenerate XML for missing file names

#45 martinjoconnor closed 6 years ago
1
Generic composable BioProject/BioSample/SRA submission mechanism

#44 martinjoconnor opened 6 years ago
0
Develop generic Human.1.0 BioSample submission mechanism

#43 martinjoconnor closed 5 years ago
0
Develop generic SRA submission mechanism

#42 martinjoconnor opened 6 years ago
0
Template-to-repository module plugin system for submission server

#41 martinjoconnor opened 6 years ago
0
Develop generic BioProject submission mechanism

#40 martinjoconnor opened 6 years ago
0
Extending Submission server to manage submissions

#39 martinjoconnor opened 6 years ago
0
Submission/AIRR Enhancements

#38 martinjoconnor opened 6 years ago
0
Verify AIRR instance internal identifier consistency

#37 martinjoconnor opened 6 years ago
0
Verify AIRR file names in instance against submission data files

#36 martinjoconnor opened 6 years ago
0
Incorrect source for Cell Subset field in AIRR template

#35 martinjoconnor closed 6 years ago
2
Patch invalid artifacts on production

#34 martinjoconnor closed 6 years ago
0
Dynamic detection of duplicate NCBI sample

#33 martinjoconnor opened 6 years ago
0
Update release date handling for AIRR template

#32 martinjoconnor closed 6 years ago
5
Requirements analysis for generic NCBI BioSample submission

#31 martinjoconnor closed 6 years ago
2
Add CEDAR attribute to BioSample submission

#30 martinjoconnor closed 6 years ago
0
AIRR validation call

#29 martinjoconnor opened 6 years ago
0
Mapping of CAIRR BioProject fields to NCBI BioProject XML

#28 martinjoconnor closed 6 years ago
1
AIRR filename/type checking

#27 martinjoconnor closed 6 years ago
0
NCBI submission credentials

#26 martinjoconnor closed 6 years ago
1
AIRR sampleID to filename association

#25 martinjoconnor closed 6 years ago
0
Switching to NCBI production server

#24 martinjoconnor closed 6 years ago
3
User studies with AIRR volunteers

#23 martinjoconnor closed 6 years ago
9
Initial Yale AIRR submission testing

#22 martinjoconnor closed 6 years ago
1
Investigate GenBank submission for AIRR

#21 martinjoconnor opened 6 years ago
3
AIRR/SRA file name validation/detection

#20 martinjoconnor closed 6 years ago
0
Create standard BioSample templates

#19 martinjoconnor opened 7 years ago
0
Complete CAIRR XML translation

#18 martinjoconnor closed 7 years ago
0
Submission wiring for new CAIRR template

#17 martinjoconnor closed 7 years ago
0
Initial NCBI XML translation for new CAIRR template

#16 martinjoconnor closed 7 years ago
1
Update ImmPort credentials

#15 martinjoconnor closed 7 years ago
0
Environment variables for external repos

#14 martinjoconnor closed 7 years ago
0
Monitor NCBI submissions

#13 martinjoconnor closed 7 years ago
0
Update AIRR convertor

#12 martinjoconnor closed 7 years ago
0
FTP submission queue

#11 martinjoconnor closed 7 years ago
0
Update AIRR template on submission server

#10 martinjoconnor closed 7 years ago
0
ImmPort data upload

#9 martinjoconnor closed 7 years ago
2
Continuous monitoring of ImmPort submission

#8 martinjoconnor closed 7 years ago
1
Create ImmPort upload registration ticket

#7 martinjoconnor closed 7 years ago
1
Get workspaces from ImmPort API

#6 martinjoconnor closed 7 years ago
1
AIRR NCBI FTP submission

#5 martinjoconnor closed 7 years ago
8
Create tests for BioSample and AIRR submission server endpoints

#4 martinjoconnor closed 5 years ago
0
Define REST tests for submission server

#3 martinjoconnor closed 7 years ago
1
Add authentication to submission server

#2 martinjoconnor closed 7 years ago
0
Add AIRR SRA FTP upload functionality

#1 martinjoconnor closed 7 years ago
2