ISA-tools isa-api issues

ISA-tools / isa-api

ISA tools API

https://isa-tools.org

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issues

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Corrected values for test_get_ontology.

#561 knirirr opened 3 weeks ago
0
Fixed ontology source references comment in isa tab

#560 terazus opened 1 month ago
1
ISA configurations & ISA-JSON

#559 proccaserra opened 2 months ago
0
Test Data Validation Changes

#558 ptth222 opened 3 months ago
1
mock pubmed API call in test

#557 proccaserra opened 3 months ago
0
Protocol types refactor

#556 ptth222 closed 2 months ago
1
Refactor isatab loader

#555 terazus closed 2 months ago
4
Dom refactor tab loader

#554 terazus closed 3 months ago
0
Add tracking to data file type column names 2.

#553 ptth222 opened 3 months ago
8
Validate config changes

#552 ptth222 opened 3 months ago
2
Extended 511

#551 proccaserra closed 3 months ago
1
More changes

#550 ptth222 closed 3 months ago
1
Testing changes to run on Windows.

#549 ptth222 closed 3 months ago
1
Fix rule and check.

#548 terazus closed 3 months ago
2
Changed file opens to binary mode for to_csv calls.

#547 terazus closed 2 months ago
4
Fix to determining JSON directory location.

#546 terazus closed 4 months ago
1
derives_from relation on Material

#545 proccaserra opened 4 months ago
0
Installation Before Testing

#544 ptth222 opened 4 months ago
0
implement a guard in material.py

#543 proccaserra opened 4 months ago
0
refactoring needed in assay_templates.py to properly handle Ontology Source

#542 proccaserra opened 4 months ago
0
rewrite more atomic tests for Process sequence to elucidate counts of events

#541 proccaserra opened 4 months ago
0
Required Fields In Investigation XML Config

#540 ptth222 opened 4 months ago
0
Update defaults.py

#539 ptth222 closed 3 months ago
2
Update ProcessSequenceFactory

#538 ptth222 closed 3 months ago
1
investigation why magetab2json on MEXP31 can not complete isa.json validation following refactor

#537 proccaserra opened 4 months ago
0
documentation needed for requesting new context files for ISA

#536 proccaserra opened 4 months ago
0
in datafile.py, ensure checkum_value can not be site if checksum_type is not specified

#535 proccaserra opened 4 months ago
0
Inconsistencies Between Code, Documentation, and Schema

#534 ptth222 opened 4 months ago
5
Changed missing required properties to error

#532 ptth222 opened 4 months ago
6
Fairly significant changes to check_protocol_fields

#531 ptth222 closed 3 months ago
4
Changed messaging on study assays errors

#530 ptth222 closed 3 months ago
2
Rename i_df and investigation_df.

#529 ptth222 closed 3 months ago
6
rewrite test for test_get_ontology in test_isatools_utils.py

#528 proccaserra opened 5 months ago
0
Added better messaging

#527 ptth222 closed 2 months ago
3
Messages silenced in write and graph.

#526 ptth222 closed 3 months ago
2
Changed Tab and JSON validate

#525 ptth222 closed 3 months ago
4
Fix rule and check.

#524 ptth222 closed 3 months ago
2
Characteristic values are recast as string in ISA tab

#523 terazus opened 5 months ago
0
ISA Tab Validation Rule Exception Messaging

#522 ptth222 opened 5 months ago
1
Changed file opens to binary mode for to_csv calls.

#521 ptth222 closed 3 months ago
5
ISA Validation Configurations Too Restrictive

#520 ptth222 opened 5 months ago
5
Fix to determining JSON directory location.

#519 ptth222 closed 4 months ago
2
Add new tests to check serialization to TAB/JSON of Quantitative Values with Units (for Characterististics. FV, PV)

#518 proccaserra opened 5 months ago
1
ISA converter - use of default configuration - update needed to cope with new assay definitions

#517 proccaserra opened 5 months ago
0
copy function invoked by json2isatab converter has side effects

#516 proccaserra opened 6 months ago
0
ISATAB serialization: effect of presence/absence to "Term Source REF" "Term Accession" on parsing

#515 proccaserra opened 6 months ago
0
Issue 511

#514 proccaserra opened 7 months ago
1
Labeled Extract silently dropped from ISA JSON serialization if Label not declared

#513 proccaserra opened 7 months ago
0
create a helper function to compute checksums for all 'Data File' objects

#512 proccaserra opened 8 months ago
0
Comments[] attached to assays aren't serialized

#511 proccaserra opened 8 months ago
1