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Description
**Sub-lineage of**: AY.34 (489 sequences)
Earliest sequence: 2021/4/19 (the UK)
Most recent sequence: 2021/9/28 (Martinique)
Countries circulating: mainly Martinique (217 sequences) an…
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Too early for a lineage designation but worth watching:
About 10% of Omicrons (47) have the mutation S:346K which has already been seen in Mu and B.1.640.
Using the available sequences from GISA…
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Using the newest versions, pango usher mode seems to label things AY.39 it shouldn't.
```
❯ pangolin --update
pangolin updated to v3.1.16
pangolearn updated to 2021-11-09
constellations updated t…
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**Description**
**Sub-lineage of**: B.1.617.2 (21J)
**Earliest sequence**: 2021/10/25 (Denmark)
**Most recent sequence**: 2021/12/11 (Denmark)
**Countries circulating**: Denmark predominantly, and…
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Description
**Sub-lineage of**: AY.4, Clade 21J (3004 sequences)
**Earliest sequence**: 2021/2/9 (Slovakia)
**Most recent sequence**: 2021/10/14 (Germany)
**Countries circulating**: the Netherland…
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**Description**
**Sub-lineage of**: AY.106 (56 sequences)
**Earliest sequence**: 2021/10/22 (Bahrain)
**Most recent sequence**: 2021/11/6 (Bahrain)
**Countries circulating**: Bahrain
**Mutation…
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https://hub.docker.com/r/neherlab/nextclade is now depreceated and updates are now at https://hub.docker.com/r/nextstrain/nextclade. This should be tested and used going forward.
JezSw updated
2 years ago
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Regarding to the lineage 1 proposed by @c19850727 in issue #206
Circulating countries: Ghana , Togo, Denmark,
Key Mutations
ORF1b: M2414I
N: P151S
Nucleotide: G20709T, C28724T
Tree:
https…
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Description
**Sub-lineage of**: AY.9 (29604 sequences)
**Earliest sequence**: 2021/1/9 (Slovakia)
**Most recent sequence**: 2021/10/20 (Belgium)
**Countries circulating**: Wide-spread, with higher…
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Using @fritzo's mutational fitness model to look for interesting lineages on a global Neherlab tree I spotted this lineage that is predicted to have a fitness advantage (by the mutations it contains).…