-
Hello,
After a few months of using the visual editor, we'd like to have **all** data shown in activity units in the curation interface, otherwise it's too confusing for curators (ie, default view …
-
The RAM is getting overloaded because the unique entities and relations are stored in RAM memory on GPU nodes of Noctua 1 (180GB usable main memory) and on Noctua 2 (470GB usable main memory). This le…
-
Doing some QC on the imports, I realized that WB (and others) have annotations to other children of 'binding' (GO:0005488) that use the IPI (ECO:0000353) evidence code and contain an entry in the With…
-
As suggested by @thomaspd, we should only show the most relevant (i.e., causal) GO-CAM models on the GO-CAM browser site.
I believe a fast way (perhaps we could call it a hack) to implement this is…
-
- [x] Make mouse models: http://noctua.geneontology.org/editor/graph/gomodel:627d95ee00000955 and DS
- [x] can R-HSA-2065233 be mapped to 'hydrolase activity, hydrolyzing O-glycosyl compounds' GO:00…
ukemi updated
2 years ago
-
@manulera (for discussion about "regulation" terms in GO and their use)
see https://www.pombase.org/term/GO:0061805
I am not sure that asp1 is "regulation" in the GO sense- but I am also not…
-
I'm not sure that this is the correct place for this ticket, but as I test ART, I am seeing a worrying number of ShEX violations in models. If we are to use ShEX in a meaningful way, we need to addres…
ukemi updated
3 years ago
-
In my P2GO annotations I wanted to model I have some SO extensions, such as SO:0100014 n-terminal region (of the has_input H2Bv3 Ddis)
I noticed I cannot add these in noctua.
Also for model
gomo…
-
In GO-CAM, we commonly have :
* GP enables MF1 -directly_regulates -> BP1
* e.g. FOXO3 enables TF activity, sequence specific DNA binding directly_activates transcription
Based on these, ide…
-
So far we've been "collapsing/consolidating," based on certain criteria (e.g. GP + term + extensions are same), multiple GPAD lines into distinct assertion individuals containing multiple evidence. I'…