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Trying to import a plate from https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0001A/2551.zarr - the import into OMERO fails with
Discovered during the ngff viewers testing.
```
bash-4.2$ cat…
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idr0012-fuchs-cellmorph
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see: https://pypi.org/project/bfio/
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We will upload image files to the [Image Data Resource](https://idr.openmicroscopy.org/) and add URL and metadata information to the [Broad Bioimage Benchmark Collection](https://data.broadinstitute.o…
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Hi all,
Thanks for the hard work on this package and overall on ome-ngff. We are very excited to learn that Dask arrays are now supported!
We have 4D data of shape `CZYX`, where typically `c=17`…
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Does this work?
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### Motivation:
Currently we initialize each `ZarrArray` in a plate layout independently. This means that we make `row x col` requests for `.zarray` metadata _prior_ to fetching any unique pixel da…
manzt updated
3 years ago
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I'm working on saving a dataset that contains multiple segmentations per image (manual segmentations by different people). Trying stuff out, I'm having three related issues:
- [ ] the labels layer …
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**NB** This workflow has been moved to https://github.com/IDR/mkngff_upgrade_scripts (main README)
Once a submission has been processed by BioStudies, it will become available at a URL like:
…
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Dear ome team,
I recently came across an interesting use case. I have couple of microscopy software tools that export very large images as a series of .tiff (or .bpm, etc) files accompanied by a me…