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Hi,
I am trying to run"annotateGenesViaCESAR.pl ....", but the following error is :
Argument "" isn't numeric in numeric gt (>) at /data/zhangbo/software/CESAR2.0-master/tools/annotateGenesViaCE…
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I would like to know how each input file was obtained, and whether I can also use hg38 as a reference genome to apply to other projects.
My current understanding is that the two 2bit files are conver…
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I used orthogroups identified in OrthoFinder as input for HyPhy analyses. I am working with 27 species, and there are 2,592 orthogroups identified as single-copy in all species. To include more orthog…
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I have tried to fix this but looks like funannotate compare needs .faa files that doesnt recognise even when I place them in the same directory
/pangenome_out# more funannotate-compare.log
[08/22/…
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Hello, I'm running dNdS() on the cds of 2 species containing 13486 orthologous pairs, but only 1754 genes get the calculations done for. The rest runs into this error.
`ERROR: number of input seqs…
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Hi,
Thank you for developing this tool. I tried to run Scenic+ on my mutiome data and I got an error message that I don't quite understand.
Could you help me with this issue.
Thanks in advance
Thi…
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Hi! I hope all is going good!
I am trying to run gimme motif2factors (v0.17.1, installed through conda/mamba) on the genome of my organism to be able to run ANANSE. I set up a folder for a custom …
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Hello @JGASmits,
Although the dry run appears to have worked the real one did not.
Here is the log file:
(anansnake) iMac-Pro:anansnake pediatrics$ less Complete log: .snakemake/log/2023-08-3…
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It would be great to know before you click on a gene which homolog has phenotype data
@harryhoch @nlwashington wouldn't that be awesome?
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Hello, I'm a novice in genomics. I'm reproducing some of the results in your paper, but when I run your code, the compiler prompts for missing data. Can you tell me how to solve it? Thank you!
`data_…