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See https://github.com/geneontology/go-site/issues/524
What appears to be happening is this. OWLTools is making an assumption that the 'namespace' tag is present, and uses this to make the aspect.
…
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* **PTHR ID & PTN node:**
GO:0004042 | acetyl-CoA:L-glutamate N-acetyltransferase activity | IBA with S000004666 , PTN000559455
* **Sequences with problematic annotation (ID + gene/protein nam…
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The cdc8 annotation to GO:0098772 is being flagged by the GO checks because the term is marked do-not-annotate:
WARNING - Violates GO Rule: GORULE:0000008: No annotations should be made to unin…
mah11 updated
2 years ago
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https://pombase.org/about/version-history
Remove Gene Build column, review other columns.
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```
> perl ./etc/test_initialise.pl
Use of uninitialized value in string ne at /usr/local/share/perl/5.26.1/PomBase/Chobo/OntologyConf.pm line 84.
Use of uninitialized value in concatenation (.) …
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https://github.com/pombase/website/issues/2120#issuecomment-1838092169
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Hi @kimrutherford @ValWood,
I was drafting the email to announce the changes, but I realised a few things that perhaps we should address:
* [x] A lot of "new genes" lacking references: both [pro…
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"Annotation extensions" are an increasingly important component of GO annotation because this is how we capture connections between terms (I.e the actual biology, and form the basis of our causal mode…
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Maybe we should a monthly release like we do for PomBase?: https://www.pombase.org/releases/
It's a less than an hour to set it up.
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* **PTHR ID & PTN node:**
S. pombe has 8 amino acid transporter family members annotated to gamma-aminobutyric acid transmembrane transporter
which seems unlikely. (especially since by most metho…