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Proposal is to formally include
* oio:inSubset - annotation property that connected a term to a subset
* oio:Subset - subset definition
in OMO
Note the way @dosumis and I chose to model su…
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I'm using JBrowse 1.11.4, with FireFox 31. I have a set of CanvasFeatures tracks with a custom onclick handler that looks like:
```
"onClick" : {
"action" : "newWindow",
"url" : "function(track…
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Given just how much information can be gleaned from these plots it would be incredibly useful if plots could be interactive (to allow for zooming, moving along a transcript structure, etc.). `plotly` …
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Hello Mol* Team,
I am using Mol*(viewer) to display a protein-ligand complex. Upon mouse-clicking the ligand, could you guide me on how to exclusively reveal the amino acid residues surrounding the…
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The [iSEE](https://bioconductor.org/packages/iSEE/) Bioconductor package enables interactive exploration of any type of data that can be stored in a [SummarizedExperiment](https://bioconductor.org/pac…
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Dear @promethiume
I have recently found your article and software, and I am trying to use it.
I think I have managed to install everything required, but when running `python Code/main.py --id #…
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**Background**:
The [cBioPortal](www.cbioportal.org) is an open-access, open-source resource for interactive exploration of multidimensional cancer genomics data sets, which are collected from a m…
inodb updated
3 months ago
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Hi all!
In this issue I would like to discuss the design of the networks/graphs API for Vispy. I know @jvtrudel has got some ideas about that, but maybe other people also have some ideas about this.
…
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This issue is part of an effort to reconcile the current [structural_variant database model](https://github.com/cBioPortal/cbioportal/blob/87e5a228d80a31515bf1a3e762bd2d70db89d2fb/db-scripts/src/main/…
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Hello,
I have run FastOMA on about 2200 genomes. The inference of HOGs finished all right (with some tweaks in the resource config), however the `fastoma_report` step failed as it consumes a very l…