-
Use this form to register a new ontology with the OBO Foundry. Please read the instructions provided here:
http://obofoundry.org/docs/NewOntologyRegistrationInstructions.html
## Ontology title
Ra…
-
I have installed openMS on LINUX KNIME and downloaded the latest proteomics_LFQ workflow.
https://github.com/OpenMS/Tutorials/tree/master/Workflows
The modification I made is insert DecoyDataba…
-
@emmats I just got reviewer comments back for the oyster proteomics paper and a reviewer asked "what fraction of peptides could be mapped to Gigaton in the different oyster seed samples." I'm not exac…
-
Hi,
I would like to check my understanding of the 3 different levels of validation thresholds available. Say for example I set the FDRs for protein, peptide and PSM at 1%, 1%, and 5%. This will mea…
-
Hi I am trying to install and use Peptide Mapper but get the following error:
wget http://genesis.ugent.be/maven2/com/compomics/utilities/4.10.0/utilities-4.10.0.zip
--2020-05-13 13:27:20-- http…
-
Hi,
I have several questions/suggestions:
- Is there any way to set up the starting directory of SearchGUI in configuration settings?
- When I write the "Name" in the "Identification settings", the…
-
Hello,
We've tried using conda to implemente SearchGui into one of our pipeline on centos.
Generating the parameter file seems to have worked just fine but when trying to run the search using such…
-
Hi! I'm trying to pull the singularity image but I get this error:
```
singularity pull --name nfcore-proteomicslfq-1.0.0.img docker://nfcore/proteomicslfq:1.0.0
WARNING: pull for Docker Hub …
-
Hello,
I am running command-line version of peptide-shaker (Ubuntu, version 1.16.45) and getting the following STDOUT upon analysis of search results (done by command-line searchGUI, version 3.3.20…
-
Hi,
I am trying to do protein quantification and I can see that there is a MS2 quant. column when visualising my project in PS. However, the visualisation software is taking some time to load the p…