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Hi,
Reverse gyrase is a type of topoisomerase activity for which there is no GO term. It is currently annotated with "GO:0003918, DNA topoisomerase II activity (double strand cut, ATP-hydrolyzing) ac…
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Orf8:S67F is a common mutation. Lots of XBB* has this branch.
I just noticed that there's a stable upward trend of the proportion of Orf8:S67F inside XBB*. It is a sum of seqs with orf8:S67F on al…
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EDIT: hit "Send" too early.
The [output documentation](https://github.com/ConesaLab/SQANTI3/wiki/Understanding-the-output-of-SQANTI3-QC#glossary-of-classification-file-columns-classificationtxt) ab…
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Hi, thanks for sharing this great work.
As for the dataset used for RNA secondary structure was mentioned in the paper: "405 RNAs for TR1, 40 RNAs for VL1 and 39 RNAs for TS1, ..., We combined TS1 a…
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Title: Cross-datasets discoverability and use within CFDE and a cloud-workspace environments
Scientific Question/Use Case:
A key challenge in data discovery is the coordination and assembly of da…
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Sublineage of FL.4
Mutations Added to FL.4: A28615G (early)->C23635T(early)->A3948G(late)->C28093T(latest) The two early silent mutation describes about 20% of FL.4 sequences. This variant likely evo…
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**Describe the bug**
pyrodigal does not work:
```
[ERROR: Pyrodigal could not be executed! Please make sure Pyrodigal is installed and executable or skip requiring workflow steps via via '--skip-c…
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Hi,
I was hoping to use the `read_eggnog_mapper` function of this package. I downloaded the humann2 "utility_mapping" database, but I can't find this file (L18 of the function's source code): ` F =…
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Hello,
First of all thank you for developing ShortStack pipeline, I'm new to these world of analyzing small RNA-seq data and I found your tool very useful for the identification/annotation step.
…
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Hi,
What does the number inside the bracket show?
I mean output from 'mxfold2 predict'.
Is it the energy of the secondary structure?
Or how can I extract energy from it?
Best,
Peyman