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If problem happens during track information deserialisation, it is visible only in log fine, for example:
```
Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: No enum const…
olegs updated
5 years ago
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Hi,
Hope you are doing well. I am trying to run HMMRATAC and it starts/ runs initially without any issues. It creates the model and starts with viterbi algorithm. But soon after that, it stops and th…
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Hi,
Thanks for this amazing package.
I have been playing with scanpy on scATACSeq data generated from 10x. And in comparison to the cellranger analysis, I think analysis scanpy does pretty desce…
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This is still using 8GB of RAM, when we need to reserve more (likely 20GB)
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Hi, thanks your wonderful work.
I run in` /mypath/atac-seq-pipeline/ `
and `source activate encode-atac-seq-pipeline`
`java -jar -Dconfig.file=backends/backend.conf -Dbackend.default=slurm /my_pa…
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For the first public release of our pipeline, we should make it independent using docker and conda.. Then we can also see whether we can add some some travis tests (issue #34) .
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Thanks for putting together and maintaining this list, it's a great community resource!
I noticed that SCRAT is listed in the RNA-seq section when it's really ATAC-seq...or epigenomics in general. …
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Hello,
I am implementing pyscenic on my laptop (MacPro 2.6 GHz Intel Core i7) using the command as followed:
`pyscenic grnboost -o scenic_out/grn_output.tsv @grn_args.txt`
in which grn_args.txt …