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**Context:**
I'm very new to DNA sequencing and bioinformatics, and I'm currently following the DADA2 tutorial for primer identification and removal. My sequence data was generated using Illumina Mi…
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Hi authors,
I have paired end fastq files of cell free DNA patients infected with sepsis. I have 6 patients files
For these 6 patients the distribution is as follows
Patient 1:
Leuconost…
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Hello,
I'm currently working on data preprocessing from multiple Illumina runs.
The first run was sequencend using a v2 kit, while the other runs used v3, which gives me different amplicon sizes (…
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Hi yuntian,
Thanks for this very useful tool for the single cell isoform data preprocessing and downstream analysis!
I couldn't find fastq sequencing data from the paper, so could you please sha…
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We're just getting in our first standard 16S data from the PacBio Revio which is using the [Kinnex kit](https://www.pacb.com/technology/kinnex/), and will soon be getting 16S-ITS-23S data. I know the…
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Hello! Thanks for your helpful tool!
I am trying to assemble long-read sequencing data with short-read polishing. My long read data (nanopore direct RNA sequencing) are from the animals under 25 de…
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### Is your feature related to a problem?
I attempted to run the workflow with the normal data coming from two separate (barcoded) sequencing runs. The two runs were basecalled (and demuxed) in two s…
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Hi! Thanks for providing a python-based version of CARLIN pipeline. We want to modify the arguments to run on our own sequencing data and reference from a different experiment protocol. However, I can…
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Based on discussions in the 3/15/23 NMDC sync meeting the workflows team will take over creation of the omics_processing_set records for ingest of JGI data using GOLD. In order to tell these records a…
aclum updated
1 month ago
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`KLSampleSheet` includes the property:
```
sections = (_HEADER_KEY, _READS_KEY, _SETTINGS_KEY, _DATA_KEY,
_BIOINFORMATICS_KEY, _CONTACT_KEY)
```
I would love to know if th…