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Allow user to use their own module files that are added to MODULEPATH. The option `--modulepathadd` can allow one or multiple paths users specified to be added to MODULEPATH by inserting a command lin…
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Thank you for this nice software, but I can't use it without sudo permission. After trying for a long time, I still can't solve this problem, so I would like to ask if you have a singularity container…
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**Is your feature request related to a problem? Please describe.**
Many scientific applications/workflows are currently written for the Kubernetes ecosystem. Running these Kubernetes-applications on …
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@djarecka - we should update containers lesson to point to your new slides and to the newer singularity slides as well.
satra updated
7 years ago
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SST is currently released as source code on
Providing a container file ("Definition file" for Apptainer / Singularity, "Dockerfile" for Docker, "Containerfile" for Podman, etc) would help new user…
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I'm testing the singularity support on 20.09. My current issue is that for tools that haven't been run, if the first run is a dataset collection, then multiple cluster nodes compete to get the contain…
pcm32 updated
3 years ago
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I might not fully understand how everything works, but would a Docker container (and presumably a Singularity container) for one of the spike sorters (say, spikeinterface/kilosort4-base) need to inclu…
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Running `datalad containers-add fMRIprep -i '/data/project/singularity/fmriprep-20.2.0.simg' -d '/data/project/hcp_movies/hcp-openaccess/'` did not result in an error even though data/project/singular…
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Containers of various flavors need to be interoperable between MAAP and HECC. Currently that means that docker containers must run on HECC system through some mechanism. The first mechanism is to use …
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Following https://support.opensciencegrid.org/support/solutions/articles/12000024676-docker-and-singularity-containers#submitting-your-docker-container-to-the-open-science-grid-repository
we can add…