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In the [documentation](https://docs.vscentrum.be/leuven/genius_quick_start.html#running-debug-jobs) all examples use `ntasks` or `n` to specify the number of CPUs needed per GPU. This generally works …
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Hello,
is it possible to implement model parallelism on the Slurm clustering system?
If so, could you provide some guidance on how to configure it?
If not, would it be possible for you to c…
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A prettier queue command:
` squeue -u $USER -o '%.20i| %.35j| %.4C| %.4D| %.2t| %.20S| %.10M| %.10L'`
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Got this error first time I did history-resume:
(It did not show up right away but after running some time)
```
Traceback (most recent call last):
File "/cluster/home/haagen/slurm/slurm2sql.py…
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**Snakemake version**
v7.32.3
**Describe the bug**
I want to set up different temp folders depending on where the workflow is being run and the amount of data. For example:
1. when…
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**Snakemake version** 8.16.0
**Describe the bug**
The default behavior of `cores` is different and limits the number of threads for submitted jobs to the number of cores on the host machine.…
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### Description of the bug
Hi,
I have been using nf-core/rnasq for a long time, but with the update of Nextflow, I am receiving the following error messages. I downloaded my fastq files with asper…
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Since a "major makeover" was mentioned for dask-mpi in dask/distributed#7192, I thought I would ask if support for non-MPI backends was a possibility. That is, use something like Slurm's `srun` to la…
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There are hardcoded paths and slurm loaded modules, these need to be provided as separate scripts -- that the user can override from its home directory, such that we can run on any slurm cluster
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