HopkinsIDD flepiMoP issues

HopkinsIDD / flepiMoP

The Flexible Epidemic Modeling Pipeline

https://flepimop.org

GNU General Public License v3.0

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issues

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Make main r scripts executable CLI

#323 pearsonca opened 3 days ago
0
[Feature request]: Harmonize EMCEE files saved to be exactly similar that classical inference

#322 jcblemai opened 5 days ago
0
Update docs running on rockfish

#321 twallema opened 6 days ago
0
Inference run does not work in MINGW64 environment

#320 kimberlynroosa opened 6 days ago
0
Refine and prune GitHub issue labels

#319 emprzy opened 1 week ago
4
[Bug]: Weird behaviours in EMCEE

#318 jcblemai opened 1 week ago
1
[Bug]: Not getting the label printed on issue template

#317 jcblemai opened 1 week ago
1
[Bug]: Changing anything likelyhood (statistic, aggregation, data) compromise emcee acceptances.

#316 jcblemai closed 1 week ago
0
[Bug]: Missing `h5py` Dependency For `gempyor`

#315 TimothyWillard opened 1 week ago
0
[Feature request]: Convert Gempyor's `setup.cfg` to `pyproject.toml`

#314 TimothyWillard opened 1 week ago
0
Improving readability/consistency of errors/exceptions in `gempyor`.

#313 emprzy opened 1 week ago
0
Code chunk that does not execute in `.../src/gempyor/initial_conditions.py` because it follows a `raise ValueError` statement

#312 emprzy opened 1 week ago
1
Some preliminary work on emcee batch

#311 jcblemai opened 1 week ago
0
Standardize and expand logging within `gempyor`

#310 emprzy opened 2 weeks ago
2
[small Bug/kind of an enhancement]: Initial conditions plugins don't save initial conditions in an easily readable format

#309 saraloo opened 2 weeks ago
0
[Bug]: Install R packages "tidy graph" and "graph" on Rockfish cluster before running `Rscript build/local_install.R`

#308 twallema opened 2 weeks ago
1
Expanding `gempyor` unit testing framework to include exception checks

#307 emprzy opened 3 weeks ago
1
`utils.py` function `profile()` has potentially unused arguments `sort_by`, `lines_to_print`, and `strip_dirs`

#306 emprzy opened 3 weeks ago
6
Fixing pull request template formatting

#305 emprzy closed 1 month ago
0
Document/Unit Test `gempyor.statistics`

#304 TimothyWillard opened 1 month ago
0
Updated tutorials taken from flepimop_sample

#303 alsnhll opened 1 month ago
1
Normalization enforces homogeneous mixing across all model strata except spatial patch

#302 twallema opened 1 month ago
0
[Bug]: Disease state given to gempyor in a `proportional_to` with length greater than one, it gets cut off at a length of one and is interpreted further without warning

#301 twallema opened 1 month ago
2
[Bug]: `gempyor.statistics` Missing Documentation/Unit Tests

#300 TimothyWillard opened 1 month ago
3
[Bug]: Specifying a transition proportional to a sum of states only uses one of states included in the sum

#299 twallema opened 1 month ago
3
[Bug]: Using disease state names 'I1' and 'I2' only works when `proportional_to` are equal to "source"

#298 twallema closed 1 month ago
4
Transitions get overwritten if there are multiple of the same source->destination transitions

#297 saraloo opened 1 month ago
3
new command flepimop-push, flepimop-pull

#296 fang19911030 opened 1 month ago
0
Trying to configure auto-population of issue labels based on issue content

#295 emprzy closed 1 month ago
2
Using undefined parameter in a symbolic rate expression (transitions) slips thru input checks and results in uninformative error

#294 twallema opened 1 month ago
0
utils.py class `ISO8601Date` method `.convert()` has potentially unused argument `view`

#293 emprzy opened 1 month ago
0
Fixing issues with inference and NAs

#292 saraloo closed 2 weeks ago
5
Remove Empty, Move Deprecated GitBook Pages

#291 TimothyWillard closed 2 weeks ago
1
Convert `as_random_distribution` To Use `scipy.stats` Distributions

#290 TimothyWillard opened 1 month ago
1
modified to capture stdout and stderr to log in using system2() being…

#289 kjsato opened 1 month ago
1
Make `test_get_run_id_default_timestamp` Test Fixture More Robust

#288 TimothyWillard closed 1 month ago
0
`TestRunId.test_get_run_id_default_timestamp` Time Dependent Test Failure

#287 TimothyWillard closed 1 month ago
0
R inference error in calculating likelihood when data is missing/NA

#286 saraloo opened 1 month ago
1
Document, Test, Repair `gempyor.subpopulation_structure` Module

#285 TimothyWillard opened 1 month ago
0
Remove GitBook Deprecated/Old/Stub Pages

#283 TimothyWillard opened 1 month ago
3
Initial python linting

#282 TimothyWillard opened 1 month ago
0
Improve Python Exception Readability/Consistency

#281 TimothyWillard opened 1 month ago
3
Split `ci.yml` into separate actions

#280 TimothyWillard opened 1 month ago
4
Add Python Code Linting For `gempyor`

#279 TimothyWillard opened 1 month ago
0
Split Up "unit-tests" GitHub Action Into Multiple Actions

#278 TimothyWillard opened 1 month ago
0
Document/Unit Test `gempyor.parameters`

#277 TimothyWillard closed 2 weeks ago
3
Document, Test, Repair `gempyor.parameters` Module

#276 TimothyWillard opened 2 months ago
3
Remove `path_prefix` Argument From `Parameters` Class

#275 TimothyWillard opened 2 months ago
2
Support Xarray In `gempyor.parameters.Parameters`

#274 TimothyWillard opened 2 months ago
0
Fixing aggregation and some aesthetics in automatic postprocessing

#273 saraloo closed 1 month ago
0