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Continuing our discussion from #113: how should complex stencils and their variations be managed?
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**1. What were you trying to do?**
I tried to perform vg construct on each chromosome
```vg construct -C -S -R ${chrs[SLURM_ARRAY_TASK_ID]} -r $ref -v ${split_chrs}/${chrs[SLURM_ARRAY_TASK_ID]}_…
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Pose a question about one of the following articles:
[“Generative agents: Interactive simulacra of human behavior.”](https://dl.acm.org/doi/abs/10.1145/3586183.3606763) Park, Joon Sung, Joseph O'B…
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Hi,
I am using bcftools 1.15.1. I want to add INFO for a vcf file of structural variations.
The vcf is like:
```
chr1 10627 ID1 N . PASS some_INFO
chr1 90238 ID2 N . PASS some_INFO
chr1 9033…
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Hi,
I'm wondering if there's anything I can do with a run of RepeatModeler that is taking a long time with eleredef. Is there a way to skip this step? Or to tell how long it's going to take, or wor…
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I went down a rabbit hole and want to pin this idea in case someone wants to take it up later: optimal fuzzy matches between the gsheet and CCV databases (or potentially any other database formats we …
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Hi,
I am using the convert_SV_callers_vcf.pl for Delly and Lumpy(smoove) output files (BCF and VCF). It does not work for Delly and Lumpy output files. the files are empty or damaged files.
I am…
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Hello
I am looking at adding GRIDSS to parliament, but it appears that survivor does not support GRIDSS output. AFAIK, GRIDSS is fully compliant with VCFv4.3 but there are a number of issues I've e…